View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_high_3 (Length: 474)
Name: NF6580_high_3
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Original strand, 43715631 - 43716092
Alignment:
| Q |
13 |
aatttgaacacagtaaaagaatcacttatggatatgcaaaccatatgaacaaggcgaacaaagcaattgcataaaaatctgtcatacaaaattagatgca |
112 |
Q |
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| T |
43715631 |
aatttgaacacagtaaaagaatcacttatggatatgcaaaccatatgaacaaggcgaacaaagcaattgcataaaaatctgtcatacaaaattagatgca |
43715730 |
T |
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| Q |
113 |
tccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaaatagaaacatggattgaaaggaaaacatggtataatggaccatnnnn |
212 |
Q |
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| T |
43715731 |
tccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaaatagaaacatggattgaaaggaaaacatggtataatggaccataaaa |
43715830 |
T |
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| Q |
213 |
nnntccaacttttaaatatgtcaaataataagaaataaagcaacagaaccaactatctcatttgtgcatgtcaataaagattatattaaaaccttaccac |
312 |
Q |
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| T |
43715831 |
aaatccaacttttaaatatgtcaaataataagaaataaagcaacagaaccaactatctcatttgtgcatgtcaataaagattctattaaaaccttaccaa |
43715930 |
T |
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| Q |
313 |
ttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccaccagtcctct |
412 |
Q |
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| T |
43715931 |
ttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccaccagtcctct |
43716030 |
T |
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| Q |
413 |
gcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcctcct |
474 |
Q |
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| T |
43716031 |
gcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcctcctcct |
43716092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 470
Target Start/End: Complemental strand, 6816803 - 6816638
Alignment:
| Q |
304 |
ccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccac |
403 |
Q |
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| T |
6816803 |
ccttaccaattgcatgaaaagacacttcaaatatgtcttttc-agtccgattcaagcgttcaaccgtaattctaagatatggttcaacccagtgatccac |
6816705 |
T |
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| Q |
404 |
cagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcc |
470 |
Q |
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| T |
6816704 |
ttgtcctctacaattctggaagacaacttcaataagctttggagctggcacaatatcattatcctcc |
6816638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 66 - 470
Target Start/End: Complemental strand, 52891929 - 52891541
Alignment:
| Q |
66 |
gcgaacaaagcaattgcataaaaatctgtcatacaaaattagatgcatccaattttttaaaacccacacacttgttgtagctcgtaagccaatgttcaaa |
165 |
Q |
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| T |
52891929 |
gcgaacaaagcaattgcataaaaaactgccatacaaaattagatgcatccaacttcttataacccacacacttgttgtagctcgtaagccaatgttcaaa |
52891830 |
T |
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| Q |
166 |
atagaaac-atggattgaaaggaaaacatggtataatggaccatnnnnnnntccaacttttaaatatgtcaaataataagaaataaagcaaca-gaacca |
263 |
Q |
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| T |
52891829 |
atagaaacaatgggttgaaaagaaaacatggtataatggaccat-cgaaaatccagctttt----------------aagaaagaaagcaacaggagcca |
52891747 |
T |
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| Q |
264 |
actatctcatttgtgcatgtcaataaagattatattaaaaccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaacttt |
363 |
Q |
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| T |
52891746 |
actatctcatttgtgcatgtcaatgaagattctattaaaaccttaccacttgaatgagaagacatttcaaatatga-ttttccagttctatgcaaacgtt |
52891648 |
T |
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| Q |
364 |
caattgtaattctgagatatggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcact |
463 |
Q |
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| T |
52891647 |
caattgtaattctgagatacggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcact |
52891548 |
T |
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