View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_high_4 (Length: 409)
Name: NF6580_high_4
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 33902977 - 33903353
Alignment:
| Q |
13 |
aaaatatttagcgggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaattcgatttttgctggc |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33902977 |
aaaatatttagctggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaatttgatttttgctggc |
33903076 |
T |
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| Q |
113 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttcannnnnnnnnnatatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33903077 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttca---tttttttatatat |
33903173 |
T |
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| Q |
213 |
taaaattgaacaaaatttacttagacttcaaataattaaattttgtagggaccaaaaatatattaatcctatataatctttagacaatcatgtgatagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
33903174 |
taaaattgaacaaaatttacttagacttcaaataattaaaatttgtagggaccaaaaatatattaaccctatataatctttagacaatcttgtgatagtt |
33903273 |
T |
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| Q |
313 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagt |
392 |
Q |
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| T |
33903274 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagt |
33903353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 33919967 - 33920343
Alignment:
| Q |
13 |
aaaatatttagcgggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaattcgatttttgctggc |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33919967 |
aaaatatttagcgggactaaccaagtaatttgactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaatttgatttttgctggc |
33920066 |
T |
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| Q |
113 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttcannnnnnnnnnatatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
33920067 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaa-ccttcatttttttt--atatat |
33920163 |
T |
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| Q |
213 |
taaaattgaacaaaatttacttagacttcaaataattaaattttgtagggaccaaaaatatattaatcctatataatctttagacaatcatgtgatagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33920164 |
taaaattgaacaaaatttacttagacttcaaataattaaaatttgtagggaccaaaaatatattaaccctatataatctttagacaatcatgtgatagtt |
33920263 |
T |
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| Q |
313 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33920264 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtataaatgattcaccagcactagt |
33920343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 43881144 - 43881112
Alignment:
| Q |
161 |
ataattgcaaaaactaaaatcatatttaaacct |
193 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
43881144 |
ataattgcaagaactaaaatcatatttaaacct |
43881112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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