View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_high_5 (Length: 357)
Name: NF6580_high_5
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 27459661 - 27459991
Alignment:
| Q |
17 |
cacttatggcatgtttaaattaaacattaatttgaataaaatttctcc----------atgttatgattttaatatttgggatactagactttgccac-t |
105 |
Q |
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| T |
27459661 |
cacttatggcatgtttaaattaaatattaatttgaataaaatttctccttctgcttatatgttatgattttaatatttgggatactagactttgccacat |
27459760 |
T |
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| Q |
106 |
aaataaacaaattatttctaacttgagaagcttacgatcaattcttaaaatgtgtttaaatgattttgaaaatttgtagtcaagataaaataaccaaaaa |
205 |
Q |
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| T |
27459761 |
aaataaacaaattatttctaacttgagcagcttacgatcaattcttaaaatgtgtttaaatgattttgaaaatttgtagccaagataaaataaccaaaaa |
27459860 |
T |
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| Q |
206 |
ttctcataaaccggtaagtagagaatctaaaccattagatttaattcactataataacatatgcgaattggatggaaacatgattggaaacgcaaaaaat |
305 |
Q |
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| T |
27459861 |
ttctcatgaactggtaagtagagaatctaaaccattagatttaattcact---ataacatatgcaaattggatggaaacatgattagaaacgcaaacaat |
27459957 |
T |
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| Q |
306 |
attttatcatttttgttgatgactgctctgatta |
339 |
Q |
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| T |
27459958 |
attttatcacttttgttgatgactgctctgatta |
27459991 |
T |
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