View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6580_high_9 (Length: 270)

Name: NF6580_high_9
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6580_high_9
NF6580_high_9
[»] chr7 (12 HSPs)
chr7 (13-236)||(24939367-24939587)
chr7 (13-257)||(31494386-31494631)
chr7 (13-185)||(36355251-36355421)
chr7 (79-188)||(47031456-47031565)
chr7 (79-185)||(32630909-32631015)
chr7 (22-193)||(48545578-48545746)
chr7 (22-70)||(152014-152062)
chr7 (25-69)||(12963734-12963778)
chr7 (22-70)||(35089986-35090034)
chr7 (22-70)||(39301125-39301173)
chr7 (22-70)||(40097250-40097298)
chr7 (22-70)||(43057561-43057609)
[»] chr8 (12 HSPs)
chr8 (13-266)||(24296337-24296589)
chr8 (115-264)||(14723647-14723805)
chr8 (79-188)||(38806694-38806803)
chr8 (13-70)||(8502779-8502836)
chr8 (13-70)||(23185844-23185901)
chr8 (23-70)||(37857156-37857203)
chr8 (24-70)||(4403145-4403191)
chr8 (22-70)||(9457699-9457747)
chr8 (22-70)||(28620000-28620048)
chr8 (22-70)||(29260156-29260204)
chr8 (22-70)||(30382554-30382602)
chr8 (22-70)||(40265161-40265209)
[»] chr5 (6 HSPs)
chr5 (13-257)||(6902358-6902608)
chr5 (79-257)||(7857236-7857422)
chr5 (25-188)||(26876311-26876470)
chr5 (13-70)||(10571258-10571315)
chr5 (82-139)||(27786417-27786474)
chr5 (82-139)||(28594254-28594311)
[»] chr2 (11 HSPs)
chr2 (13-185)||(38822700-38822870)
chr2 (81-185)||(25684589-25684693)
chr2 (81-185)||(24935905-24936009)
chr2 (22-264)||(27090791-27091040)
chr2 (84-264)||(2373186-2373374)
chr2 (81-185)||(38536021-38536125)
chr2 (210-264)||(2485215-2485269)
chr2 (132-185)||(2485376-2485429)
chr2 (22-70)||(24193366-24193414)
chr2 (22-70)||(29941101-29941149)
chr2 (22-70)||(34028812-34028860)
[»] chr4 (7 HSPs)
chr4 (22-188)||(5117117-5117282)
chr4 (23-70)||(36479354-36479401)
chr4 (22-70)||(8583885-8583933)
chr4 (23-70)||(32322127-32322174)
chr4 (22-70)||(33450059-33450107)
chr4 (22-70)||(41581911-41581959)
chr4 (22-70)||(54509870-54509918)
[»] chr6 (4 HSPs)
chr6 (81-185)||(35165017-35165121)
chr6 (22-70)||(7497111-7497159)
chr6 (22-70)||(29834165-29834213)
chr6 (22-70)||(29865599-29865647)
[»] chr1 (7 HSPs)
chr1 (13-257)||(9191278-9191533)
chr1 (80-263)||(49459829-49460019)
chr1 (22-70)||(1928284-1928332)
chr1 (22-70)||(26882706-26882754)
chr1 (22-70)||(36402403-36402451)
chr1 (22-70)||(45318616-45318664)
chr1 (22-70)||(52705549-52705597)
[»] chr3 (12 HSPs)
chr3 (22-188)||(6783864-6784029)
chr3 (84-239)||(25712212-25712375)
chr3 (113-185)||(43151403-43151475)
chr3 (79-150)||(24574647-24574718)
chr3 (23-70)||(12103665-12103712)
chr3 (13-64)||(25713324-25713375)
chr3 (23-70)||(44276425-44276472)
chr3 (22-70)||(19552028-19552076)
chr3 (22-70)||(26005863-26005911)
chr3 (22-70)||(35731088-35731136)
chr3 (22-70)||(39338177-39338225)
chr3 (22-70)||(46252083-46252131)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-70)||(81662-81710)
[»] scaffold0237 (1 HSPs)
scaffold0237 (22-70)||(21293-21341)
[»] scaffold0202 (1 HSPs)
scaffold0202 (22-70)||(16422-16470)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 24939587 - 24939367
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||        | ||||||||||||||||||||||||||||||||    
T  24939587 aaaatctgatggtattcaattaaaatttttcataacttaaaaatagtct-ttggtattcaaaaa--tttatagattttaatgaatttcttaatagaatag 24939491  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagacttttactcccattatattttctttcttc 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24939490 attttgtgagactttttagttgaaaattttaaaactaacaatctcatgcaaagacatgagatttcttgagacttttactcccattatattttctttcttc 24939391  T
Q  213 tcccacatcactcatcaacatgtg 236  Q
    ||||||||||||||||||||||||    
T  24939390 tcccacatcactcatcaacatgtg 24939367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 31494386 - 31494631
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||        ||||| |||||||||| ||| |||  |||||| |    
T  31494386 aaaatctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtattaaaaaa--tgtattgattttaatggattacttggtagaatgg 31494483  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac---ttttactcccattatattttctttc 209  Q
    ||||||||| ||||||| ||| ||||||||||||||||| ||||||| |||| |||||||||||||||||||   ||||||||  ||  | |||  ||      
T  31494484 attttgtgaaactttttggttaaaaattttaaaactaacaatctcatacaaaaacatgagatttcttgagactctttttactcatatgttctttcattgt 31494583  T
Q  210 ttctcccacatcactcatcaacatgtgttactgttgatatcctccttt 257  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  31494584 ttctcccacttcactcatcaacatgtgttattgttgatatcctccttt 31494631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 36355421 - 36355251
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||||||||||||| ||| ||||||||||  ||||||||||| |||  ||| ||||        |||||||||||||||| ||| ||| ||| ||| |    
T  36355421 aaaatctgatggtattaaatcaagatttttctcaacttaaaaattgtcctttgttattcaaaaa--tgtatagattttaatggattccttgatataatgg 36355324  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagact 185  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||| |||||    
T  36355323 attttgtgagactttttagttgaaaattttaaaactaacaatctcatataaagacctgagatttcttaagact 36355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 47031456 - 47031565
Alignment:
Q  79 tgtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttct 178  Q
    ||||||||||| |||||||| ||||||||||| |||||||| | |||||||| ||  |||||||||||||||| ||||||| |||||||  |||||||||    
T  47031456 tgtatagatttcaatgaattacttaatagaatggattttgtaaaactttttaattataaattttaaaactaacaatctcatacaaagactcgagatttct 47031555  T
Q  179 tgagactttt 188  Q
    ||||||||||    
T  47031556 tgagactttt 47031565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 32630909 - 32631015
Alignment:
Q  79 tgtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttct 178  Q
    |||||||||||||||| ||| ||| ||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||  || ||| ||||||||||    
T  32630909 tgtatagattttaatggattccttgatataatggattttgtgagactttttagttaaaaattttaaaactaacaatctcatataaggacctgagatttct 32631008  T
Q  179 tgagact 185  Q
    | |||||    
T  32631009 taagact 32631015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 48545746 - 48545578
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatagattttgtga 121  Q
    |||||||| || ||||||||||  |||||||||||  ||||||||||||        ||||||||||| |||| ||| |||| |  ||| ||||||||||    
T  48545746 tggtattccatcaagatttttcgcaacttaaaaat--tctcttggtattcaaaaa--tgtatagatttcaatggattccttattgaaatggattttgtga 48545651  T
Q  122 gactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac-ttttactcc 193  Q
    |||||||||||| ||||||| ||||||||| || |||| ||||||| |||||||||||||||| |||||||||    
T  48545650 gactttttagttaaaaatttcaaaactaacaatttcatacaaagacttgagatttcttgagacattttactcc 48545578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 152014 - 152062
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  152014 tggtattcaattgagattttgcataacttaaaaattgtctaatggtatt 152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 12963734 - 12963778
Alignment:
Q  25 tattcaattaagatttttcataacttaaaaatagtctcttggtat 69  Q
    |||||||| |||||||||||| ||||||||| |||||| ||||||    
T  12963734 tattcaatcaagatttttcattacttaaaaaaagtctcgtggtat 12963778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 35090034 - 35089986
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  35090034 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 35089986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 39301173 - 39301125
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  39301173 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 39301125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40097250 - 40097298
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  40097250 tggtattcaattcagattttgcacaacttaaaaattgtctattggtatt 40097298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 43057609 - 43057561
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  43057609 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 43057561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 24296589 - 24296337
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||||||||||||||||| || |  |||||||||||||||||||||||||| ||||        |||||||||||||||| |||  ||  |||||| |    
T  24296589 aaaatctgatggtattcaataaaaaaatttcataacttaaaaatagtctcttgatattcaaaaa--tgtatagattttaatggattctttggtagaatgg 24296492  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac-ttttactcccattatattttctttctt 211  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  24296491 attttgtaagactttttagttgaaaattttaaaactaacaatctcatgcaaagacatgagatttcttgagactttttacttctattatattttctttctt 24296392  T
Q  212 ctcccacatcactcatcaacatgtgttactgttgatatcctcctttcatttttct 266  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  24296391 ctcccacatcactcatcaacatgtgttactcttgatatccttctttcgtttttct 24296337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 14723805 - 14723647
Alignment:
Q  115 tttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac---ttttactcccattatat-tttctttc- 209  Q
    ||||| ||||||||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||||||   ||||||| ||||||||| ||| ||||     
T  14723805 tttgtaagactttttagttaaaatttttaaaactaacaatctcatacaaacacatgagatttcttgagaccctttttacttccattatatatttttttcg 14723706  T
Q  210 ----ttctcccacatcactcatcaacatgtgttactgttgatatcctcctttcattttt 264  Q
        ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  14723705 ttatttctcccacttcactcatcaacaggtgttactgttgatatcctcctttcattttt 14723647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 38806803 - 38806694
Alignment:
Q  79 tgtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttct 178  Q
    ||||||||||| |||| ||| |||| || ||| ||| ||||||||| |||||||||||||||||||||||||| |||||||  |||||| |||||||| |    
T  38806803 tgtatagatttcaatggattccttactataatggatattgtgagacattttagttgaaaattttaaaactaacaatctcatataaagacttgagattttt 38806704  T
Q  179 tgagactttt 188  Q
    ||||| ||||    
T  38806703 tgagattttt 38806694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 8502779 - 8502836
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||| | |||||||||||||||||||| || ||||||||||| |||| ||||||||    
T  8502779 aaaatccggtggtattcaattaagattttgcacaacttaaaaattgtctattggtatt 8502836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 23185844 - 23185901
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||| |||||||    
T  23185844 aaaatctggtggtattcaatcaaaatttttcacaacttaaaaattgtctcctggtatt 23185901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 37857156 - 37857203
Alignment:
Q  23 ggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    ||||||||||||||||||||||| ||||||||| |||||  |||||||    
T  37857156 ggtattcaattaagatttttcatcacttaaaaaaagtcttgtggtatt 37857203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 4403145 - 4403191
Alignment:
Q  24 gtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||||||||||||| ||||||||| | |||| |||||||    
T  4403145 gtattcaattaagatttttcatcacttaaaaaaaatctcgtggtatt 4403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9457699 - 9457747
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| |||| | ||||||    
T  9457699 tggtattcaattgagattttgcataacttaaaaattgtctatcggtatt 9457747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 28620000 - 28620048
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  28620000 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 28620048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29260204 - 29260156
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  29260204 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 29260156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 30382602 - 30382554
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  30382602 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 30382554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 40265209 - 40265161
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  40265209 tggtattcaattgagattttgcataacttaaaaattgtctaatggtatt 40265161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 6902608 - 6902358
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||        ||||| ||||| |||| ||| |||  |||||| |    
T  6902608 aaaatctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtattcaaaaa--tgtattgatttcaatggattacttggtagaattg 6902511  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac---ttttactcccattatattttctttc 209  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||| |||||| |||||||||||||||||   |||||||| |||||||| |||||||    
T  6902510 attttgtgagactttttagttaaaaattgtaaaactaacaatctcatacaaagatatgagatttcttgagactctttttactctcattatatgttctttc 6902411  T
Q  210 -----ttctcccacatcactcatcaacatgtgttactgttgatatcctccttt 257  Q
         ||||||||| ||||||||||||||||||||  |||||||| |||||||    
T  6902410 attgtttctcccacttcactcatcaacatgtgttatcgttgatattctccttt 6902358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 7857236 - 7857422
Alignment:
Q  79 tgtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttct 178  Q
    ||||||||||| |||| ||| |||  |||||| |||||||||||||||||| ||| ||| ||||||||||||| ||||||| ||||||||||||||||||    
T  7857236 tgtatagatttcaatggattacttggtagaatggattttgtgagacttttttgttaaaatttttaaaactaacaatctcatacaaagacatgagatttct 7857335  T
Q  179 tgagac---ttttactcccattatattttctttc-----ttctcccacatcactcatcaacatgtgttactgttgatatcctccttt 257  Q
    ||| ||   ||||||||| |||| || |||||||     ||||||||| ||||| ||||||||||||||||||| ||||| ||||||    
T  7857336 tgaaactctttttactcctattacatattctttcattgtttctcccacttcacttatcaacatgtgttactgttaatatcatccttt 7857422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 26876311 - 26876470
Alignment:
Q  25 tattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatagattttgtgagac 124  Q
    |||||||| ||||||||||| ||||||||||| ||||||| |||||        |  ||| |||| |||| ||| |||| || |||||||||||  ||||    
T  26876311 tattcaatcaagatttttcacaacttaaaaattgtctcttagtattctaaaa--ttaatatatttcaatggattacttagtataatagattttg--agac 26876406  T
Q  125 tttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagactttt 188  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||   ||||||| || ||||||||    
T  26876407 tttttagtttaaaattttaaaactaacaatctcatacaaagattcgagattttttaagactttt 26876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 10571258 - 10571315
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||| | ||||||||||||||||||||  | ||||||||||| |||| ||||||||    
T  10571258 aaaatccggtggtattcaattaagattttgtacaacttaaaaattgtctattggtatt 10571315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 27786417 - 27786474
Alignment:
Q  82 atagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaat 139  Q
    ||||||||||||| |||  || || |||| |||||||||||||||||||||| |||||    
T  27786417 atagattttaatggattcttttatggaatggattttgtgagactttttagttaaaaat 27786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 28594311 - 28594254
Alignment:
Q  82 atagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaat 139  Q
    ||||||||||||| |||  || ||| ||| |||||||||||||||||||||| |||||    
T  28594311 atagattttaatggattcttttatataatggattttgtgagactttttagttaaaaat 28594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 38822870 - 38822700
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||| | |||||||| || ||||||||||| ||||||||||| |||||||||||||        ||||||||||| |||| ||| |||  || ||| |    
T  38822870 aaaatccggtggtattcgatcaagatttttcacaacttaaaaattgtctcttggtattaaaaaa--tgtatagatttcaatggattacttggtataatgg 38822773  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagact 185  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38822772 attttgtgagattttttagttgaaaattttaaaactaacaatctcatacaaagacatgagatttcttgagact 38822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 25684693 - 25684589
Alignment:
Q  81 tatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttg 180  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||  || ||| |||||||||||     
T  25684693 tatagattttaatgaattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttctta 25684594  T
Q  181 agact 185  Q
    |||||    
T  25684593 agact 25684589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 24936009 - 24935905
Alignment:
Q  81 tatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttg 180  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||  || ||| |||||||||||     
T  24936009 tatagattttaatggattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttctta 24935910  T
Q  181 agact 185  Q
    |||||    
T  24935909 agact 24935905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 27090791 - 27091040
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatagattttgtga 121  Q
    |||||||||| || ||||||| | ||||||||||| ||| |||||||||        |||||||||||||||  ||| ||| ||||||| |||||||| |    
T  27090791 tggtattcaactatgatttttaacaacttaaaaattgtcccttggtattaaaaaaa-tgtatagattttaatagattacttgatagaatggattttgtaa 27090889  T
Q  122 gactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac---ttttactcccattatattttctttc-----ttct 213  Q
    |||||||||||||||||||||||||||||| ||||||| || |||  | | ||||||||| ||   |||||||| |||||||  || ||||     ||||    
T  27090890 gactttttagttgaaaattttaaaactaacaatctcatacagagatctaaaatttcttgaaactctttttactctcattatacgttatttcgtcgtttct 27090989  T
Q  214 cccacatcactcatcaacatgtgttactgttgatatcctcctttcattttt 264  Q
    ||||| ||||||  |||||||||||||| |||||| ||| |||||||||||    
T  27090990 cccacttcactcgccaacatgtgttactattgataacctactttcattttt 27091040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 264
Target Start/End: Original strand, 2373186 - 2373374
Alignment:
Q  84 agattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgaga 183  Q
    |||||| |||| ||| |||  |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||   ||| |  |||||||| ||||||    
T  2373186 agatttcaatggattacttggtagaatggattttctgagactttttagttgaaaattttaaaactaacaatctcacataaatatctgagattttttgaga 2373285  T
Q  184 c---ttttactcccattatattttctttc-----ttctcccacatcactcatcaacatgtgttactgttgatatcctcctttcattttt 264  Q
    |   |||||||| |||||||| |||||||     |||||| || ||| | | |||||||||||| ||||||||||||||||||||||||    
T  2373286 ctttttttactctcattatatgttctttcatcaattctcctacttcatttaacaacatgtgttattgttgatatcctcctttcattttt 2373374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 38536125 - 38536021
Alignment:
Q  81 tatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttg 180  Q
    |||||||||||||| ||| |||  || |||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||    
T  38536125 tatagattttaatggattccttgctacaatgaattttgtgagactttttagttgaaaattttaaaactaacaatctcatacaaacacgtgagatttcttg 38536026  T
Q  181 agact 185  Q
    |||||    
T  38536025 agact 38536021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 2485269 - 2485215
Alignment:
Q  210 ttctcccacatcactcatcaacatgtgttactgttgatatcctcctttcattttt 264  Q
    ||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||    
T  2485269 ttctcccacttcactcgtcaacatgtcttaccgttgatatcctcctttcattttt 2485215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 2485429 - 2485376
Alignment:
Q  132 ttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagact 185  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  2485429 ttgagaattttaaaactaacaatctcatacaaagacctgagatttcttgagact 2485376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 24193414 - 24193366
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  24193414 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 24193366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 29941101 - 29941149
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  29941101 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 29941149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 34028860 - 34028812
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  34028860 tggtattcaattcagattttgcacaacttaaaaattgtctattggtatt 34028812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 5117117 - 5117282
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatagattttgtga 121  Q
    |||||||| || ||||||||||  ||||||||||| ||||||| |||||        ||||||||||| |||| ||| |||| |||||| ||||||||||    
T  5117117 tggtattccatcaagatttttcgcaacttaaaaattgtctcttagtattaaaaaaa-tgtatagatttcaatggattccttagtagaatggattttgtga 5117215  T
Q  122 gactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagactttt 188  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||    
T  5117216 gactttttagttaaaaattttaaaactaacaatctcatacaaagacttaagatttcttgagactttt 5117282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 36479401 - 36479354
Alignment:
Q  23 ggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  36479401 ggtattcaattaagatttttcatcacttaaaaaaagtctcgtggtatt 36479354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 8583933 - 8583885
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||||||||||| |||||||||||||| ||||  |||||||    
T  8583933 tggtattcaattaagattttgcataacttaaaaattgtctactggtatt 8583885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 32322127 - 32322174
Alignment:
Q  23 ggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||| |||||||||||| |||||||||||||||  |||||||    
T  32322127 ggtattcaatcaagatttttcatcacttaaaaatagtcttgtggtatt 32322174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 33450107 - 33450059
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  33450107 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 33450059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 41581959 - 41581911
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    ||||||||| |||||| ||||| ||||||||||| |||||| |||||||    
T  41581959 tggtattcagttaagaattttcttaacttaaaaaaagtctcgtggtatt 41581911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 54509870 - 54509918
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  54509870 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 54509918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 35165017 - 35165121
Alignment:
Q  81 tatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttg 180  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||  || ||| |||||||||||     
T  35165017 tatagattttaatgaattccttaatataatagattttgtgagactttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttctta 35165116  T
Q  181 agact 185  Q
    |||||    
T  35165117 agact 35165121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 7497111 - 7497159
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    ||||||||||| |||||||||||| ||||||||| |||||  |||||||    
T  7497111 tggtattcaatcaagatttttcatcacttaaaaaaagtcttgtggtatt 7497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29834213 - 29834165
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| |||| | ||||||    
T  29834213 tggtattcaattgagattttgcataacttaaaaattgtctatcggtatt 29834165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29865647 - 29865599
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| |||| | ||||||    
T  29865647 tggtattcaattgagattttgcataacttaaaaattgtctatcggtatt 29865599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 9191278 - 9191533
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaatttcttaatagaatag 112  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||| |||||||||||||        ||||| ||||| |||| ||| |||  |||||| |    
T  9191278 aaaatctggtggtattcaatcaagatttattacaacttaaaaattgtctcttggtattcaaaaa--tgtattgatttcaatggattacttggtagaatgg 9191375  T
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagac---ttttactccc-----attatatttt 204  Q
    ||||||||||| |||||| || |||||| ||||| ||||  |||||| ||||||||||||||||||||||||   |||||||| |     ||||||| ||    
T  9191376 attttgtgagattttttattttaaaattgtaaaagtaacattctcatacaaagacatgagatttcttgagactctttttactctcgttatattatatgtt 9191475  T
Q  205 ctttc-----ttctcccacatcactcatcaacatgtgttactgttgatatcctccttt 257  Q
    |||||     ||| ||||| |||||||||||||||||||| |||||||||||| ||||    
T  9191476 ctttcattgtttcccccacttcactcatcaacatgtgttattgttgatatccttcttt 9191533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 49460019 - 49459829
Alignment:
Q  80 gtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttctt 179  Q
    |||||||||| |||| ||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||  |||||| |||||| | ||    
T  49460019 gtatagatttcaatggattacttgatataatggattttgtgagactttttagttgaaaattttaaaactagcaatctcatataaagacctgagatatgtt 49459920  T
Q  180 gaga---cttttactcccattatattttctttc-----ttctcccacatcactcatcaacatgtgttactgttgatatcctcctttcatttt 263  Q
    ||||    ||||||| || |||||| |||||||     ||| | ||||||||||||||| || |||||| |||||||| |||||||||||||    
T  49459919 gagattctttttact-ccgttatatgttctttcatcatttccctcacatcactcatcaatatatgttaccgttgatattctcctttcatttt 49459829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 1928332 - 1928284
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  1928332 tggtattcaattcagattttgcacaacttaaaaattgtctattggtatt 1928284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 26882754 - 26882706
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  26882754 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 26882706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 36402403 - 36402451
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  36402403 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 36402451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 45318616 - 45318664
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  45318616 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 45318664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 52705549 - 52705597
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  52705549 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 52705597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 6784029 - 6783864
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtattnnnnnnnntgtatagattttaatgaattt-cttaatagaatagattttgtg 120  Q
    |||||||| || |||||||| || ||||||||||| |||||||| ||||        ||||||||||| |||| || | ||||||||||| |||||||||    
T  6784029 tggtattccatcaagattttccacaacttaaaaattgtctcttgatattcaaaaa--tgtatagatttcaatggatatacttaatagaatggattttgtg 6783932  T
Q  121 agactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagactttt 188  Q
    | |||||||||||||||| || |||| |||| ||||||| |||||| |||||||||||| ||||||||    
T  6783931 aaactttttagttgaaaaattcaaaattaacaatctcatacaaagatatgagatttcttaagactttt 6783864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 25712375 - 25712212
Alignment:
Q  84 agattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgaga 183  Q
    |||||| |||| ||| |||  |||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||| || ||| ||||| | |||    
T  25712375 agatttcaatggattacttggtagaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaatacctgatatttcgtaaga 25712276  T
Q  184 c---ttttactcccattatattttctttc-----ttctcccacatcactcatcaacatgtgtta 239  Q
    |   |||||||| |||||||| |||||||     |||||| || ||||||||||||||||||||    
T  25712275 ctttttttactctcattatatgttctttcatcatttctcctacttcactcatcaacatgtgtta 25712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 43151403 - 43151475
Alignment:
Q  113 attttgtgagactttttagttgaaaattttaaaactaacgatctcatgcaaagacatgagatttcttgagact 185  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||| |||||||    
T  43151403 attttgtgagactttttagttgaaaattttaaaactaacaatcttgtacaaagacatgagatttcatgagact 43151475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 24574718 - 24574647
Alignment:
Q  79 tgtatagattttaatgaatttcttaatagaatagattttgtgagactttttagttgaaaattttaaaactaa 150  Q
    ||||||||||| |||| ||| |||  || ||| |||||||||||||||||||| ||||||||||||||||||    
T  24574718 tgtatagatttcaatggattacttgctataatggattttgtgagactttttaggtgaaaattttaaaactaa 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 12103665 - 12103712
Alignment:
Q  23 ggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||| |||||||||||| ||||||||| |||||| |||||||    
T  12103665 ggtattcaatcaagatttttcatcacttaaaaaaagtctcatggtatt 12103712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 25713375 - 25713324
Alignment:
Q  13 aaaatctgatggtattcaattaagatttttcataacttaaaaatagtctctt 64  Q
    |||||| | ||||||||||| ||||||||||| ||||||||||| |||||||    
T  25713375 aaaatccgttggtattcaatcaagatttttcacaacttaaaaattgtctctt 25713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 44276425 - 44276472
Alignment:
Q  23 ggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||| |||||||||||| ||||||||| |||||| |||||||    
T  44276425 ggtattcaatcaagatttttcatcacttaaaaaaagtctcatggtatt 44276472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19552076 - 19552028
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    ||||||| |||||||||||| |||||||||||||| ||||  |||||||    
T  19552076 tggtatttaattaagattttgcataacttaaaaattgtctagtggtatt 19552028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 26005911 - 26005863
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  26005911 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 26005863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 35731088 - 35731136
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  35731088 tggtattcaattgagattttgcataacttaaaaattgtctactggtatt 35731136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 39338225 - 39338177
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  39338225 tggtattcaattgagattttgcacaacttaaaaattgtctattggtatt 39338177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 46252131 - 46252083
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||  |||||||    
T  46252131 tggtattcaattgagattttgcataacttaaaaattgtctgctggtatt 46252083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 81710 - 81662
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| ||||| |||||||    
T  81710 tggtattcaattgagattttgcataacttaaaaattgtctcctggtatt 81662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 21341 - 21293
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| |||| | ||||||    
T  21341 tggtattcaattgagattttgcataacttaaaaattgtctatcggtatt 21293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16470 - 16422
Alignment:
Q  22 tggtattcaattaagatttttcataacttaaaaatagtctcttggtatt 70  Q
    |||||||||||| ||||||| |||||||||||||| |||| || |||||    
T  16470 tggtattcaattgagattttgcataacttaaaaattgtctattagtatt 16422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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