View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6580_low_1 (Length: 582)

Name: NF6580_low_1
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6580_low_1
NF6580_low_1
[»] chr5 (1 HSPs)
chr5 (52-574)||(27507916-27508438)
[»] chr7 (3 HSPs)
chr7 (59-357)||(26145808-26146109)
chr7 (52-254)||(44748002-44748198)
chr7 (335-400)||(44747927-44747992)
[»] chr6 (2 HSPs)
chr6 (59-357)||(137288-137589)
chr6 (59-356)||(30232121-30232421)
[»] chr4 (3 HSPs)
chr4 (52-248)||(35192947-35193137)
chr4 (335-400)||(35192866-35192931)
chr4 (140-197)||(36606507-36606564)
[»] chr2 (1 HSPs)
chr2 (269-357)||(1148332-1148420)
[»] chr3 (1 HSPs)
chr3 (244-400)||(46301074-46301230)


Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 52 - 574
Target Start/End: Original strand, 27507916 - 27508438
Alignment:
Q  52 ttgtttgaagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactca 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27507916 ttgtttgaagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaatacaaacaccagtgccaacgagttatgactca 27508015  T
Q  152 cttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgcttcggtgaggtaccgagaatgtc 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508016 cttagtaactcagcttcacgttcaaaactcaccgttggagttgacggaaggaaaggtaacggcaacggcggttttgcttcggtgaggtaccgagaatgtc 27508115  T
Q  252 agaagaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27508116 agaagaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttattgctgccggtgaagaaggaacacttgaagctgttatttgcgc 27508215  T
Q  352 agcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaaacggttagttcatgtaaccggccacagccaccacctccaccgccgcaatac 451  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508216 cgcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaaacggttagttcatgtaaccggccacagccaccacctccaccgccgcaatac 27508315  T
Q  452 catcaccacagcaatcaattctcgccttactaccaccgcgctcctccttccacagccggttaccttcaccaccatcatcttgcaactccggtggcacatc 551  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508316 catcaccacaacaatcaattctcgccttactaccaccgtgctcctccttccacagccggttaccttcaccaccatcatcttgcaactccggtggcacatc 27508415  T
Q  552 acagaccgttggctctctctgct 574  Q
    ||||||||||||||||| |||||    
T  27508416 acagaccgttggctctccctgct 27508438  T

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Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 59 - 357
Target Start/End: Original strand, 26145808 - 26146109
Alignment:
Q  59 aagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactcacttagta 158  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||    
T  26145808 aagagtgaaatggaatttgatgaacaagcggaacaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgattgacttggta 26145907  T
Q  159 actcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccgagaatgtcagaa 255  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||   || ||||||||| ||||||||||||    
T  26145908 attcagcttcacgttcaaaactcaccgtcgtagttgacggaaggaaaggtaatggcaacggcggttttgtttcgacgatgaggtacctagaatgtcagaa 26146007  T
Q  256 gaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgcagct 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||    
T  26146008 gaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagttgctatttgcgccgct 26146107  T
Q  356 tg 357  Q
    ||    
T  26146108 tg 26146109  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 44748198 - 44748002
Alignment:
Q  52 ttgtttgaagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactca 151  Q
    ||||||||||||||| ||||||||||||||||||||         ||| || |||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  44748198 ttgtttgaagagtgagatggaatttgatgaacaaga---------agatgatatggagattctagaaacataaacaccagtgccaacaagttatgactca 44748108  T
Q  152 cttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccgagaat 248  Q
    |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||   || |||||||||||||||    
T  44748107 cttgctaactcggcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaatggcaacgacggttttgtttcaacgatgaggtaccgagaat 44748008  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 44747992 - 44747927
Alignment:
Q  335 gaagctgttatttgcgcagcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaa 400  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  44747992 gaagctgttatttgcgccgcttgtaactgtcaccagaacttccactgcaaagagatcgatggtgaa 44747927  T

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Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 59 - 357
Target Start/End: Original strand, 137288 - 137589
Alignment:
Q  59 aagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactcacttagta 158  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  137288 aagagtgaaatggaatttgatgaataagcggaacaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgactgacttggta 137387  T
Q  159 actcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccgagaatgtcagaa 255  Q
    | ||| ||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||   || ||||||||||||||||||||||    
T  137388 attcaacttcaagttcaaaactcaccgtcgtagttgacagaaggaaaggtaatggcaacggcggttttgtttcgacgatgaggtaccgagaatgtcagaa 137487  T
Q  256 gaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgcagct 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||    
T  137488 gaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgatgtcggtgaacaaggaacacttgaagctgttatttgcgccgct 137587  T
Q  356 tg 357  Q
    ||    
T  137588 tg 137589  T

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Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 59 - 356
Target Start/End: Original strand, 30232121 - 30232421
Alignment:
Q  59 aagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactcacttagta 158  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  30232121 aagagtgaaatggaatttgatgaataagcggaacaagaagaggagatggagattccaaaaacacaaacaccagtgccaacgagttatgactgacttggta 30232220  T
Q  159 actcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccgagaatgtcagaa 255  Q
    | |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||   || ||||||||||||||||||||||    
T  30232221 attcagcttcacattcaaaactcaccgtcgtagttgacggaaggaaaggtaatggcaacggcggttttgttttgacgatgaggtaccgagaatgtcagaa 30232320  T
Q  256 gaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgcagct 355  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  30232321 gaatcacgttgttagcttcggtggccacgttgttgacggttcttgcgagtttatcgctgccgatgaagaaggaacacttgaagctgttatttgcgccgct 30232420  T
Q  356 t 356  Q
    |    
T  30232421 t 30232421  T

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Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 248
Target Start/End: Complemental strand, 35193137 - 35192947
Alignment:
Q  52 ttgtttgaagagtgaaatggaatttgatgaacaagaggaacaagaagaggagatggagattccagaaacacaaacaccagtgccaacgagttatgactca 151  Q
    ||||||||||||||| ||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35193137 ttgtttgaagagtgagatggaatttgatgaacaaga---------agaggatatggagattccagaaacacaaacaccagtgccaacaagttatgactca 35193047  T
Q  152 cttagtaactcagcttcacgttcaaaactcaccgtcggagttgacggaaggaaaggtaacggcaacggcggttttgctt---cggtgaggtaccgagaat 248  Q
    |||  |||||| ||||||||||||||||| ||||||| |||||||||| | |||||||||||||||  |||||||| ||   ||||||||||||||||||    
T  35193046 cttgctaactcggcttcacgttcaaaacttaccgtcgaagttgacggatgaaaaggtaacggcaacaacggttttgtttcaacggtgaggtaccgagaat 35192947  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 35192931 - 35192866
Alignment:
Q  335 gaagctgttatttgcgcagcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaa 400  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  35192931 gaagctgttatttgcgccgcttgtaactgtcaccagaacttccaccgcaaagagatcgatggtgaa 35192866  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 36606507 - 36606564
Alignment:
Q  140 agttatgactcacttagtaactcagcttcacgttcaaaactcaccgtcggagttgacg 197  Q
    |||| ||||||||| ||||||||||||||| |||||||||  |||||||||| |||||    
T  36606507 agttctgactcactcagtaactcagcttcatgttcaaaaccaaccgtcggagctgacg 36606564  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 1148420 - 1148332
Alignment:
Q  269 agcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgcagcttg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1148420 agcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgttatttgcgccgcttg 1148332  T

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Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 244 - 400
Target Start/End: Complemental strand, 46301230 - 46301074
Alignment:
Q  244 agaatgtcagaagaatcacgccgttagcttcggtggccacgctgttgacggttgttgcgagtttatcgctgccggtgaagaaggaacacttgaagctgtt 343  Q
    ||||||||| |||||||||||||| ||| | || || || || || || || |||||||||||| | |||||||| || ||||||||||| ||||| ||     
T  46301230 agaatgtcaaaagaatcacgccgtcagcataggcggtcatgccgtggatggatgttgcgagtttttagctgccggagaggaaggaacactggaagcggtg 46301131  T
Q  344 atttgcgcagcttgtaactgtcaccggaacttccaccgcaaagagatcgatggtgaa 400  Q
    ||||| || ||||||  ||||||||||||||||||||||||||| ||||| ||||||    
T  46301130 atttgtgctgcttgtggctgtcaccggaacttccaccgcaaagaaatcgacggtgaa 46301074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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