View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_10 (Length: 272)
Name: NF6580_low_10
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 22794684 - 22794932
Alignment:
| Q |
17 |
accactaagactttgaatttgtattgtgtatagctcgtcagaaagagaaggcaaactcatcagtaaatgagttggtagaggcagtaagcagaagaccaag |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22794684 |
accagtaagactttgaatttgtattgtgtatagctcgtcagaaagagaaggcaaactcatcagtaaatgagttggtagaggcagtaagcagaagaccaag |
22794783 |
T |
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| Q |
117 |
gtcactcagtgaatcagcaaaccgacctccctttataaaagtgccaacaaaaacagtgcatagtagtgatcatgcaacacaagaacttcaaaaaacacca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22794784 |
gtcactcagtgaatcagcaaaccgacctccctttataaaagtgccaacaaaaacagtacatagtagtgatcatgcaacacaagaacttcaaaaaacacca |
22794883 |
T |
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| Q |
217 |
tccaagtcatcaaggagaagaaaatccgagagtactttgccttcatttc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22794884 |
tccaagtcatcaaggagaagaaaatccgagagtactttgccttcatttc |
22794932 |
T |
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