View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_12 (Length: 219)
Name: NF6580_low_12
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 43716443 - 43716544
Alignment:
| Q |
1 |
ggagacactgattcatctctagcttt-ctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatg |
99 |
Q |
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| T |
43716443 |
ggagacactgattcatctctagcttttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatg |
43716542 |
T |
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| Q |
100 |
aa |
101 |
Q |
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| T |
43716543 |
aa |
43716544 |
T |
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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 43716542 - 43716611
Alignment:
| Q |
138 |
gaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
207 |
Q |
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| T |
43716542 |
gaaatcaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
43716611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 6814847 - 6814765
Alignment:
| Q |
125 |
ccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
207 |
Q |
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| T |
6814847 |
ccatacttggaaaaaaatcgattgcccaatctgccaatgcttccatcatcactggccaaagactccacatatccagagatatt |
6814765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 52887439 - 52887245
Alignment:
| Q |
9 |
tgattcatctctagctttctatgttattaacatataaaaa-gaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaattgtag |
107 |
Q |
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| T |
52887439 |
tgattcatctctagctgtctaagttattaacaagtaaaaaagaagtccaaa-gtactgaacttttggaaggcaaaga---taagttgagat-aattgcaa |
52887345 |
T |
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| Q |
108 |
tcagatgtatttgagagccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
207 |
Q |
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| T |
52887344 |
tcaaatgtagttgagagccatacttgaaaagaaatcaatagcccaatctgatagtgcttccatcatcaatggccaaaggttccacatgtccagtgatatt |
52887245 |
T |
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