View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_13 (Length: 211)
Name: NF6580_low_13
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24938963 - 24938788
Alignment:
| Q |
17 |
aatattatcaatttacttttgaaggaataaattattatcaatttattattcaaacggaacatgtataagaagatgatagtttatggtagaatagtctata |
116 |
Q |
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| T |
24938963 |
aatattatcaatttacttttgaaggaataaattattatcaatttattattcaaacggaacatgtataagaagatgatagtttatggtagaatagtctata |
24938864 |
T |
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| Q |
117 |
ttcatgataaattgatttaaatttatactccgtaacaatttcttaacaattgaggaatttcttcctcactcaaaca |
192 |
Q |
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| T |
24938863 |
ttcatgataaattgatttaaatttatactccgtaacaatttcttaacaattgaggaatttcttcctcactcaaaca |
24938788 |
T |
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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 24296105 - 24296053
Alignment:
| Q |
49 |
tattatcaatttattattcaaacggaacatgtataagaagatgatagtttatg |
101 |
Q |
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| T |
24296105 |
tattatcaatttattattcaaacggaacatgtataaaaagatgatagtttatg |
24296053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 6901779 - 6901715
Alignment:
| Q |
49 |
tattatcaatttattattcaaacggaaca---tgtataagaagatgatagtttatggtagaatag |
110 |
Q |
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| T |
6901779 |
tattatcaatttattgttcaaacggaacaacatgtataagaagaagataatttatggtagaatag |
6901715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 9191922 - 9191959
Alignment:
| Q |
74 |
aacatgtataagaagatgatagtttatggtagaatagt |
111 |
Q |
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| T |
9191922 |
aacatgtataagaagaagataatttatggtagaatagt |
9191959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 32905731 - 32905694
Alignment:
| Q |
106 |
aatagtctatattcatgataaattgatttaaatttata |
143 |
Q |
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| T |
32905731 |
aatagtctataatcatgacaaattgatttaaatttata |
32905694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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