View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_2 (Length: 506)
Name: NF6580_low_2
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 2384210 - 2383721
Alignment:
| Q |
1 |
ataactgtctgatcattagaacgtttgactttttatcataaccacttcgaaagcaacacacgtaattggttgtgatgcggtgacagtgtaaaaccgttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2384210 |
ataactgtctgatcattagaacgtttgactttttatcataaccacttcgaaagccacacacgtaattggttgtgatgcggtggcagtgtaaaaccgttta |
2384111 |
T |
|
| Q |
101 |
cacttacagtgcaaaaaactgaaattcttttgatttaattctatcaagtacacagtaggtaagatattctgcataatgcagatagtttatttctgataca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2384110 |
caccgacagtgcaaaaaactgaaattcttttgatttaattctatcaagtacacagtaggtaagatattctgcataatgcagatagtttatttctgataca |
2384011 |
T |
|
| Q |
201 |
aaaccaagagatacaaaggcaaaatctgagacacattacatggatctacaaaagcaatacatgaaggtctagttgaacataacaagatgatgaatcacac |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2384010 |
aaaccaagagatacaaaggtaaaatctgagacacattacatggatctacaaaagcaatacatgaaggtctagttgaacataacaagatgatgaatcacac |
2383911 |
T |
|
| Q |
301 |
cacaaaactacacattattttcaagtgaatcacaaatatagtccttaaattgtagatctttgaaaaatttagtccttgaaattgacgaaattctaaaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2383910 |
cacaaaactacacattattttcaagtgaatcacaaatatagtccttaaattgtagatctttgaaaaatttagtccttgaaattgacgaaattctaaaatg |
2383811 |
T |
|
| Q |
401 |
atcatcgtaaccgaaatttccccccggatcacattagtcattttgcgccagacaatttagttcgtgcgaaaaggttctataggcactaat |
490 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2383810 |
atcatcgtaaccgaaatttccccccagatcacattagtcattttgcgtcagacaatttagttcgtgcgaaaaggttctatatgcactaat |
2383721 |
T |
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