View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_6 (Length: 314)
Name: NF6580_low_6
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 22794909 - 22795219
Alignment:
| Q |
1 |
ccgagagtactttgccttcatttcgacgcaaatcacattctggag---gaggagatactcattttaattcaatgcatcccatcactgagacccctgaaaa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22794909 |
ccgagagtactttgccttcatttcgacgcaaatcacattctggaggaggaggagatactcattttaattcaatgcatcccatcactgagacccctgaaaa |
22795008 |
T |
|
| Q |
98 |
taaaatcaactcgcgtcgccgttctttcatggggtatgtatgcatttttacttccaactactcgtctttttagtttgaaaaa--atatgtgttttctttt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
22795009 |
taaaatcaactcgcgtcgccgttctttcatggggtatgtatgcatttttacttacaactactcatctttttagtttgaaaaaatatatgtgttttctttt |
22795108 |
T |
|
| Q |
196 |
tgctcgtattcaatgtcatgagcaatttgta--tacatgcttctgcaggttcataaggaaaagtttgtcaaacaatgaaagcttcaatgatgaacagctt |
293 |
Q |
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|||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795109 |
tgctcgtattcaatgtcatgagcattttgtatgtgttttcttctgcaggttcataaggaaaagtttgtcaaacaatgaaagcttcaatgatgaacagctt |
22795208 |
T |
|
| Q |
294 |
gctgatgatga |
304 |
Q |
| |
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||||||||||| |
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| T |
22795209 |
gctgatgatga |
22795219 |
T |
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