View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6580_low_9 (Length: 283)
Name: NF6580_low_9
Description: NF6580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6580_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 40972740 - 40972492
Alignment:
| Q |
18 |
tatacttctctggaactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatacaagagcatattgcaga |
117 |
Q |
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| T |
40972740 |
tatactcctctgatactatttataagaaaaaattagtgtatttggaccaaattttataccaaatacattagctttttcgtatataagagcatattgcaga |
40972641 |
T |
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| Q |
118 |
tagaaatgatggcataggttttggagtttcgaaacaataagttag-ttaaaattagggtttgatttataattttattgaacctgcatagctttctcctgt |
216 |
Q |
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| T |
40972640 |
tagaaatgatgacataggttttggagtttcgaaacaataagttagtttaaaattagggtttgatttataaatttattgaacctgcatagctttctcctgt |
40972541 |
T |
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| Q |
217 |
cagaaacaaaccccttgatctataggaaggaaacttctcgtaccatttt |
265 |
Q |
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| T |
40972540 |
cagaaacaaaccccttgatctataggaaggaaacttctcgtaccatttt |
40972492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 40960946 - 40961014
Alignment:
| Q |
196 |
acctgcatagctttctcctgtcagaaacaaaccccttgatctataggaaggaaacttctcgtaccattt |
264 |
Q |
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| T |
40960946 |
acctgcataactttctccggtaagaaacaacttcctcgatttgtatgaaggaaacttctcgtaccattt |
40961014 |
T |
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