View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_1 (Length: 713)
Name: NF6581_high_1
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_1 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Original strand, 781 - 1484
Alignment:
| Q |
1 |
ttagttcacacacaaattaaaattaaaattaaaagaaataatttattcataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
781 |
ttagttcacacacaaattaaaattaaaattaaaagaaataatttattcataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtca |
880 |
T |
|
| Q |
101 |
aaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaatgtgtggcataacataataattgactagtttatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
881 |
aaataaattttatttagggttgtgtttaaacaagagtttctctattccacaagtccaattgtaatgtgtggcataacataataattgactagtttatgtt |
980 |
T |
|
| Q |
201 |
gtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaaactcattataacctatgtgtgtgatgaatcctcattatgtaatgttttttagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
981 |
gtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaaactcattataacctatgtgtgtgatgaatcctcattatgtaatgttttttagt |
1080 |
T |
|
| Q |
301 |
atgttatcgcatctctgtcttatcatttgaggactttttaaatgttttagagtgaattactcgtggtttaaataatattttgttttgagttattgtaatt |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1081 |
atgttatcgcatctctttcttatcatttgaggactttttaaatgttttagagtgaattactcgtggtttaaaaaatattttgttttgagttattgtaatt |
1180 |
T |
|
| Q |
401 |
ctctttcttccctaaccaaaaattataggcgttttgaatcttctttggtataaatcatgaaagtaagtccaccaagatatctcttgaaagttatggaagc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1181 |
ctctttcttccctaaccaaaaattataggcgttttaaatcttttttggtataaatcatgaaagtaagtcaaccaagatatctcttgaaagttatggaagc |
1280 |
T |
|
| Q |
501 |
cagaagatcaatacaatgaaacatatgaagaccaaataacttgggggaactttgtccctaagtctcaagctcatatcaaggatgaaataaacaagaagaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
1281 |
cagaagatcaatacaatgaaacatatgaagaccaaataacttgggggaactttgtccctaagtcccaagctcatatcaaggatgaaataaacaagaagaa |
1380 |
T |
|
| Q |
601 |
tgaagaaaacaacggaaaaagcctctgatccatgcaccccgcacacagacccagtgcgccccacacatgttgaagcttacagagcataatttgctctctg |
700 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1381 |
tgaagaaaacaatggaaaaagcctctgatccatgcaccccacacacagacccagtgcgccccacacatgttgaagcttacagagcataatttgctctctg |
1480 |
T |
|
| Q |
701 |
ctcc |
704 |
Q |
| |
|
|||| |
|
|
| T |
1481 |
ctcc |
1484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 65 - 620
Target Start/End: Original strand, 6369889 - 6370437
Alignment:
| Q |
65 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
164 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||| |||||||||||| |||||| ||||||| |||||| || |
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|
| T |
6369889 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6369988 |
T |
|
| Q |
165 |
tgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaaactcattataacctatg |
264 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||| || |||||||||||||| ||| | ||| |
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|
| T |
6369989 |
tgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattcaaattatcaacctctt--------atg |
6370080 |
T |
|
| Q |
265 |
tgtgtgatgaatcctcattatgtaatgttttttagtatgttatcgcatctctgtcttatcatttgaggactttttaaatgttttagagtga---attact |
361 |
Q |
| |
|
|||||||||| || ||| |||| || |||| |||||||||||| || | |||| ||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
6370081 |
tgtgtgatgactctccatcatgtgatattttc-agtatgttatcgagcctttttcttgtcatttgaggactttctaaatgttttagagtgagttattact |
6370179 |
T |
|
| Q |
362 |
cgtggtttaaataatattttgttttgagttattgtaattctctttcttccctaaccaaaaattataggcgttttgaatcttctttggtataaatcatgaa |
461 |
Q |
| |
|
|||||||||| ||| |||||||| | | ||||||||||||||||| ||||||| | ||||| ||||||| |||| ||| |||||||||||||| |
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|
| T |
6370180 |
cgtggtttaagaaatgatttgtttttaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttttttagtataaatcatgaa |
6370279 |
T |
|
| Q |
462 |
agtaagtccaccaagatatctcttgaaagttatggaagccagaagatcaatacaatgaaacatatgaagaccaaataacttgggggaactttgtccctaa |
561 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| || |
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|
| T |
6370280 |
agtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttgggggaattttgtccc-aa |
6370378 |
T |
|
| Q |
562 |
gtctcaagctcatatcaaggatgaaataaacaagaagaatgaagaaaacaacggaaaaa |
620 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
6370379 |
atccaaagctcatatcaaggatgaaataaacatgaagaatgaagaaaacaagggaaaaa |
6370437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 65 - 620
Target Start/End: Original strand, 6378354 - 6378902
Alignment:
| Q |
65 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
164 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||| |||||||||||| |||||| ||||||| |||||| || |
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|
| T |
6378354 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6378453 |
T |
|
| Q |
165 |
tgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaaactcattataacctatg |
264 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||| || |||||||||||||| ||| | ||| |
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|
| T |
6378454 |
tgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattcaaattatcaacctctt--------atg |
6378545 |
T |
|
| Q |
265 |
tgtgtgatgaatcctcattatgtaatgttttttagtatgttatcgcatctctgtcttatcatttgaggactttttaaatgttttagagtga---attact |
361 |
Q |
| |
|
|||||||||| || ||| |||| || |||| |||||||||||| || | |||| ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
6378546 |
tgtgtgatgactctccatcatgtgatattttc-agtatgttatcgagcctttttcttgtcatttgaggactttctaaatgttttagagtgagttattact |
6378644 |
T |
|
| Q |
362 |
cgtggtttaaataatattttgttttgagttattgtaattctctttcttccctaaccaaaaattataggcgttttgaatcttctttggtataaatcatgaa |
461 |
Q |
| |
|
|||||||||| ||| |||||||| | | ||||||||||||||||| ||||||| | ||||| ||||||| |||| ||| |||||||||||||| |
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|
| T |
6378645 |
cgtggtttaagaaatgatttgtttttaatcgttgtaattctctttctttcctaaccctactctatagatgttttgagtcttttttagtataaatcatgaa |
6378744 |
T |
|
| Q |
462 |
agtaagtccaccaagatatctcttgaaagttatggaagccagaagatcaatacaatgaaacatatgaagaccaaataacttgggggaactttgtccctaa |
561 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| || |
|
|
| T |
6378745 |
agtaagtcaaccaagacatctcttgaaagttatgggagctagaagatcaatacaatgaaacatatgaagactaaataatttgggggaattttgtccc-aa |
6378843 |
T |
|
| Q |
562 |
gtctcaagctcatatcaaggatgaaataaacaagaagaatgaagaaaacaacggaaaaa |
620 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
6378844 |
atccaaagctcatatcaaggatgaaataaacatgaagaatgaagaaaacaagggaaaaa |
6378902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 563 - 653
Target Start/End: Complemental strand, 24303668 - 24303578
Alignment:
| Q |
563 |
tctcaagctcatatcaaggatgaaataaacaagaagaatgaagaaaacaacggaaaaagcctctgatccatgcaccccgcacacagaccca |
653 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
24303668 |
tctcaagctcatatcaatgatgaaaatctgatgaaggatgaagaaaacaaaggaaatcgcctctgatccatgcaccccacacacagaccca |
24303578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 6383907 - 6383946
Alignment:
| Q |
377 |
attttgttttgagttattgtaattctctttcttccctaac |
416 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
6383907 |
attttgttttgagttgttgtaattctcattcttccctaac |
6383946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 609
Target Start/End: Complemental strand, 9855036 - 9854987
Alignment:
| Q |
560 |
aagtctcaagctcatatcaaggatgaaataaacaagaagaatgaagaaaa |
609 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9855036 |
aagtcccaaactcatatcaaggatgaaaaaaacatgaagaatgaagaaaa |
9854987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 34514802 - 34514867
Alignment:
| Q |
64 |
ttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaa |
129 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| | ||||||||||||||| | ||| ||||||| |
|
|
| T |
34514802 |
ttttcttttaattttttatatttatgtgtatgtccccaaataaattttatttggagttatgtttaa |
34514867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 13601320 - 13601410
Alignment:
| Q |
31 |
aaaagaaataatttattcataccacttaatatg-ttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttg |
122 |
Q |
| |
|
||||||||||||||| ||| | ||| |||||| ||||||||||| || ||| | | |||||| ||||| |||||||||||||||||||||| |
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| T |
13601320 |
aaaagaaataatttactcacatcacctaatatcattttcttttaaattttatcagtcatgtgt--gtgtccaaataaattttatttagggttg |
13601410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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