View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_14 (Length: 364)
Name: NF6581_high_14
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 49765914 - 49765581
Alignment:
| Q |
1 |
ctaaagagaatcatcagaataatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgct |
100 |
Q |
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| T |
49765914 |
ctaaagagaatcatcagaataatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgct |
49765815 |
T |
|
| Q |
101 |
ttctgctagaggatgattgattacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaatta |
200 |
Q |
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| T |
49765814 |
ttctgctagaggatgattgattacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaatta |
49765715 |
T |
|
| Q |
201 |
atttactactggtctattgttattacttcaactactttgtttatcttatgggtttgtcttaattaaatcataactttctagtaactcttcaaagttctag |
300 |
Q |
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| T |
49765714 |
a-ttactactggtc-------------tctactactttgtttatcttatgggtttgtcttaattaaatcataactttctagtaactcttcaaagttctag |
49765629 |
T |
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| Q |
301 |
ctagctagctctatctttcagttttgtggatacttgcttcttgttaat |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765628 |
ctagctagctctatctttcagttttgtggatacttgcttcttgttaat |
49765581 |
T |
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