View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_22 (Length: 291)
Name: NF6581_high_22
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 50320050 - 50319777
Alignment:
| Q |
1 |
tacccctgtccaaccgtctttcattccttctctcatctcactccacgtgtcactctctaattcgtatacccaacctctcggcctaaccgcaaacggccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50320050 |
tacccctgtccaaccgtctttcattccttctctcatcttactccacgtgtcactctctaattcgtatacccaacctctcggcctaaccgcaaaaggccac |
50319951 |
T |
|
| Q |
101 |
caccacccttccgttaagtacatcttccctccattaacaaccgtctcatacctccttaactcccccgtaaattgcgcacctctcttccacgtgtcacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50319950 |
caccacccttccgttaagtacatcttccctccattaacaaccgtctcatacctccttaactcccccgtaaattgcgcacctctcttccacgtgtcacttt |
50319851 |
T |
|
| Q |
201 |
ccaggtcgtagattcccgtcccgctctcaccaacggtcacgatttttcctttaacttcctccgccgcggagaat |
274 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50319850 |
ccgggtcgtagattcccgtcccgctctcaccaacggtcacgatttttcctttaacttcctccgccgcggagaat |
50319777 |
T |
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