View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_high_25 (Length: 255)

Name: NF6581_high_25
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_high_25
NF6581_high_25
[»] chr7 (21 HSPs)
chr7 (10-237)||(20140850-20141077)
chr7 (11-236)||(20133350-20133575)
chr7 (23-234)||(20374538-20374749)
chr7 (32-236)||(20351928-20352132)
chr7 (32-236)||(20361235-20361439)
chr7 (23-236)||(20360954-20361167)
chr7 (10-236)||(20338735-20338961)
chr7 (10-230)||(20126223-20126447)
chr7 (43-233)||(22080712-22080902)
chr7 (23-233)||(22069935-22070145)
chr7 (38-230)||(22063481-22063673)
chr7 (37-236)||(6864840-6865038)
chr7 (36-102)||(20130501-20130567)
chr7 (139-236)||(660880-660977)
chr7 (145-233)||(22100439-22100527)
chr7 (38-92)||(22088432-22088486)
chr7 (40-89)||(16846644-16846693)
chr7 (208-236)||(13416944-13416972)
chr7 (208-236)||(14076687-14076715)
chr7 (208-236)||(14386715-14386743)
chr7 (37-89)||(29881094-29881146)
[»] chr4 (3 HSPs)
chr4 (169-236)||(53774810-53774877)
chr4 (167-232)||(11971019-11971084)
chr4 (167-232)||(11981720-11981785)
[»] chr1 (2 HSPs)
chr1 (37-236)||(15961066-15961265)
chr1 (37-78)||(21855574-21855615)
[»] scaffold0867 (1 HSPs)
scaffold0867 (145-233)||(4705-4793)
[»] chr5 (2 HSPs)
chr5 (37-78)||(24331090-24331131)
chr5 (208-236)||(18964863-18964891)
[»] chr6 (1 HSPs)
chr6 (168-236)||(6947913-6947981)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 20141077 - 20140850
Alignment:
Q  10 attattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141077 attattctgctcgttatgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcc 20140978  T
Q  110 tataggtttcagagaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20140977 tataggtttcagagaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagta 20140878  T
Q  210 tggcaaatgaaggaatttggagttgaaa 237  Q
    ||||||||||||||||||||||||||||    
T  20140877 tggcaaatgaaggaatttggagttgaaa 20140850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 20133575 - 20133350
Alignment:
Q  11 ttattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcct 110  Q
    |||||||| || |||||||||||  ||||||| |||| |||| ||||||| |||||||||| || ||| ||| ||||||||||||||||| |||||||||    
T  20133575 ttattctgttcattatgatttcaggaatattattattcaccattttgtgactgtttctcttaatctggtcactgagacacattctcaactatcgcctcct 20133476  T
Q  111 ataggtttcagagaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtat 210  Q
       |||||||  ||||| || ||| ||||||||||||||||||||||||||||     | ||||||||| ||||||||||||||||||||||||||||||    
T  20133475 cagggtttcaccgaagtacctattgttgtaccatatctaagtttgttaaaggattgcatgtgtttttcacatgattacaaacaaactcatttggtagtat 20133376  T
Q  211 ggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||| |||||||||||||||    
T  20133375 ggcaaatgaaagaatttggagttgaa 20133350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 20374749 - 20374538
Alignment:
Q  23 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 122  Q
    |||||||| |||||||||||||||| | |||||| | ||| |||||||| ||||||| || || ||||||||||| |||| |||||||  ||| ||||      
T  20374749 ttatgattgcaacaatattactattcagcaatttatcattatttctcttgatttgggtactgaaacacattctcagcttttgcctcctcaaggcttcatg 20374650  T
Q  123 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 222  Q
    ||||| |||||| ||| ||||||||||||| || |||||||   ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||    
T  20374649 gaagtgccgattgttgcaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaagg 20374550  T
Q  223 aatttggagttg 234  Q
    ||||||||||||    
T  20374549 aatttggagttg 20374538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 20351928 - 20352132
Alignment:
Q  32 caacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccg 131  Q
    |||||||||||||||  | |||||||||||  |||||||| |||||| ||| || || |||||||  |||| ||| |||  |||||||| |||||| ||     
T  20351928 caacaatattactatcaagcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgcca 20352027  T
Q  132 atttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggag 231  Q
    ||  ||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  20352028 atcgttgtaccatatctaagtgtgttaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatttggag 20352127  T
Q  232 ttgaa 236  Q
    |||||    
T  20352128 ttgaa 20352132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 20361439 - 20361235
Alignment:
Q  32 caacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccg 131  Q
    |||||||||||||||| | |||||||||||  |||||||| ||||||||||||| || | ||||||||||| ||| |||  ||||||||  ||||| ||     
T  20361439 caacaatattactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctcaacttttgccacctcaaggtttcacggaagtgcca 20361340  T
Q  132 atttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggag 231  Q
    ||| ||||||||||||||||| || |||||||   ||||||||||||| |||||||||||||||||||||| ||  | | | |||| |||||||||||||    
T  20361339 attgttgtaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtgatttaggaaataaaggaatttggag 20361240  T
Q  232 ttgaa 236  Q
    |||||    
T  20361239 ttgaa 20361235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 20360954 - 20361167
Alignment:
Q  23 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 122  Q
    |||||||| |||||| |||||| || | |||||||| ||| |||||||  |||||||||| || ||||||||| | ||||  |||||   || |||||      
T  20360954 ttatgattgcaacaaaattactcttcaacaatttgtcattatttctctcgatttgggcactgaaacacattcttagctttttcctccacaagatttcacg 20361053  T
Q  123 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 222  Q
     |||| |||||| ||||||||||||||||| ||||| ||||   ||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||    
T  20361054 aaagtaccgattgttgtaccatatctaagtgtgttagaggattgtctttgtttttcacatgattacaaacaaactcattttgtattatgagaaatgaagg 20361153  T
Q  223 aatttggagttgaa 236  Q
    ||||||||||||||    
T  20361154 aatttggagttgaa 20361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 20338735 - 20338961
Alignment:
Q  10 attattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcc 109  Q
    |||| ||||||| |||| ||| | | ||||||||| || | |||||||||||| | ||| || | ||| |||| ||||||||||||||  ||  ||| ||    
T  20338735 attactctgctccttataattgcgagaatattactgttcagcaatttgtgattatatctattgacttgagcactgagacacattctcagattctgccacc 20338834  T
Q  110 tataggtttcagagaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagta 209  Q
    |  ||||||||  ||||  |||||| |||||||| || ||||| ||||||| ||| |||||||||||||  |||||||| || |||||||||| ||| ||    
T  20338835 tcaaggtttcactgaagcgccgattgttgtaccaaatttaagtgtgttaaacgactatctttgtttttcccatgattaccaaaaaactcattttgtaata 20338934  T
Q  210 tggcaaatgaaggaatttggagttgaa 236  Q
    ||| ||||||||||||| |||||||||    
T  20338935 tggaaaatgaaggaattaggagttgaa 20338961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 20126447 - 20126223
Alignment:
Q  10 attattctgctcgttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcc 109  Q
    |||| ||||||| |||||||| ||| ||||| |||||| | |||||||||||| |||| ||| | |||||||| |||||||||||||| |||  ||| ||    
T  20126447 attactctgctccttatgattgcaagaatatcactattcagcaatttgtgattatttcccttgacttgggcactgagacacattctcagcttctgccacc 20126348  T
Q  110 tataggtttcagagaagtcc----cgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggt 205  Q
    |  ||||||||  ||||| |    ||||| |||||||| || ||||| |||||||||||  |||||||||| |  ||||||||  |||||||||||| ||    
T  20126347 tcaaggtttcactgaagtacgtagcgattgttgtaccaaatataagtgtgttaaaggactgtctttgttttccccatgattacgtacaaactcattttgt 20126248  T
Q  206 agtatggcaaatgaaggaatttgga 230  Q
    | ||||  ||||||| |||||||||    
T  20126247 aatatgtaaaatgaaagaatttgga 20126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 22080712 - 22080902
Alignment:
Q  43 ctattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcg-cctcctataggtttcagagaagtcccgatttttgtac 141  Q
    ||||||| |||||| ||||| |||| ||| |||||||||||||||||||| || || ||||| ||||||    |||||   ||||| ||  || || |||    
T  22080712 ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgct-aagtttcggcctcctcacagtttcgttgaagttccctttgttatac 22080810  T
Q  142 catatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagtt 233  Q
    || |||||||| ||||||||||   ||||||||||||  |||||| |||||||||||||||  |  |||||||||||||| |||||||||||    
T  22080811 caaatctaagtatgttaaaggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagtt 22080902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 22069935 - 22070145
Alignment:
Q  23 ttatgatttcaacaatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcaga 122  Q
    |||| |||||||  |||||||||||||  ||||||||||| |||| ||| ||||||| |||||||||||| || |  | | |||||||   ||||||       
T  22069935 ttataatttcaaggatattactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgat 22070034  T
Q  123 gaagtcccgatttttgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaagg 222  Q
    ||||| ||  || || ||||| |||||||| | ||||||||   ||||||||||||  |||||| ||||| |||||||||  |  ||||||||||||||     
T  22070035 gaagtgccatttgttataccaaatctaagtgttttaaaggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagc 22070134  T
Q  223 aatttggagtt 233  Q
    |||||||||||    
T  22070135 aatttggagtt 22070145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 22063481 - 22063673
Alignment:
Q  38 tattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgattttt 137  Q
    |||||||||||  |||||||||||| |||| ||| |||||||||| ||| || || || || | |  ||||||   |||||||| ||||| ||  || ||    
T  22063481 tattactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccatttgtt 22063580  T
Q  138 gtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttgga 230  Q
     ||||| | |||||| | ||||| ||  ||||||||||||   |||||| ||||||||||||||| ||  |||||||||||||||||||||||    
T  22063581 ataccaaaactaagtgtcttaaatgattatctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttgga 22063673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 6865038 - 6864840
Alignment:
Q  37 atattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgatttt 136  Q
    ||||||||||||| ||||||| |||| |||| ||| |||||| |||  ||| |||| |||   | || ||||||   |||||||  ||||| || ||| |    
T  6865038 atattactattgagcaatttgagattatttcacttcatttggacactaagatacatactcgtttgtctcctcctcagggtttcattgaagtgccaattgt 6864939  T
Q  137 tgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 236  Q
    ||  ||| |||||||  ||||||||||   ||| | ||||||  |||||| |||||||||||||||| || |||||  ||||||||||||||||||||||    
T  6864938 tgccccaaatctaagcgtgttaaaggattgtctctatttttctcatgatttcaaacaaactcatttg-taatatggttaatgaaggaatttggagttgaa 6864840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 20130567 - 20130501
Alignment:
Q  36 aatattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaacttt 102  Q
    ||||||| |||| ||||| |||||||| |||||||  ||||||||||  ||||||||||||||||||    
T  20130567 aatattagtattcaccaacttgtgattatttctctcgatttgggcactaagacacattctcaacttt 20130501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 660977 - 660880
Alignment:
Q  139 taccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 236  Q
    ||||| |||||||| ||||||||||   |||||||||||   | |||| ||||||||||| ||| ||  ||||||| |||||||||||| ||||||||    
T  660977 taccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaaactcgttttgttatatggcagatgaaggaatttcgagttgaa 660880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 22100439 - 22100527
Alignment:
Q  145 atctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagtt 233  Q
    |||||||| | ||||| ||  |||||||||||||  |||||| |||| ||||||||||  |  |||||||||||||| |||||||||||    
T  22100439 atctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagtt 22100527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 22088432 - 22088486
Alignment:
Q  38 tattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacat 92  Q
    |||||||||||| |||||||||||| |||| ||| |||||||||| ||| |||||    
T  22088432 tattactattgagcaatttgtgattatttcacttgatttgggcactgaggcacat 22088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 16846693 - 16846644
Alignment:
Q  40 ttactattgaccaatttgtgattgtttctctttatttgggcaccgagaca 89  Q
    ||||| |||| |||||||||||| |||||||| |||||||||| ||||||    
T  16846693 ttactgttgagcaatttgtgattatttctcttgatttgggcacggagaca 16846644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 13416972 - 13416944
Alignment:
Q  208 tatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||||||||||||||||||||||    
T  13416972 tatggcaaatgaaggaatttggagttgaa 13416944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 14076687 - 14076715
Alignment:
Q  208 tatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||||||||||||||||||||||    
T  14076687 tatggcaaatgaaggaatttggagttgaa 14076715  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 14386715 - 14386743
Alignment:
Q  208 tatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||||||||||||||||||||||    
T  14386715 tatggcaaatgaaggaatttggagttgaa 14386743  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 29881094 - 29881146
Alignment:
Q  37 atattactattgaccaatttgtgattgtttctctttatttgggcaccgagaca 89  Q
    |||||||| ||||||||||||| |||||||| ||| ||||||| || ||||||    
T  29881094 atattactgttgaccaatttgttattgtttcacttgatttggggactgagaca 29881146  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 53774810 - 53774877
Alignment:
Q  169 tttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||| |||||||  ||| |||||||||| ||  |||||||||||||||||||||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaa 53774877  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 11971084 - 11971019
Alignment:
Q  167 tctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagt 232  Q
    ||||||||||||  ||||||   ||||||||||||| ||  |||||||||||||||||||||||||    
T  11971084 tctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagt 11971019  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 11981785 - 11981720
Alignment:
Q  167 tctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagt 232  Q
    ||||||||||||  ||||||   ||||||||||||| ||  |||||||||||||||||||||||||    
T  11981785 tctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagt 11981720  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 15961066 - 15961265
Alignment:
Q  37 atattactattgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgatttt 136  Q
    ||||| ||||||| || |||||||||||||| ||| |||||||||| ||||||||| ||||  |  | ||||||| ||||||||  ||||| ||   | |    
T  15961066 atatttctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagttccatatgt 15961165  T
Q  137 tgtaccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 236  Q
    |  |||| |||||||| |||||||  |   ||||||||||||  |||| | ||||||||| ||| ||||  ||||| |||||||| ||||||||| ||||    
T  15961166 taaaccaaatctaagtgtgttaaataattgtctttgtttttctcatgacttcaaacaaacacatatggttatatggaaaatgaagaaatttggagctgaa 15961265  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 21855615 - 21855574
Alignment:
Q  37 atattactattgaccaatttgtgattgtttctctttatttgg 78  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  21855615 atattactgttgaccagtttgtgattgtttctcttgatttgg 21855574  T

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Target: scaffold0867 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 4793 - 4705
Alignment:
Q  145 atctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagtt 233  Q
    |||||||| | ||||| ||  |||||||||||||  |||||| |||| ||||||||||  |  |||||||||||||| |||||||||||    
T  4793 atctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagtt 4705  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 24331131 - 24331090
Alignment:
Q  37 atattactattgaccaatttgtgattgtttctctttatttgg 78  Q
    |||||||| ||||||| |||||||||||||||||| ||||||    
T  24331131 atattactgttgaccagtttgtgattgtttctcttgatttgg 24331090  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 18964891 - 18964863
Alignment:
Q  208 tatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||||||||||||||||||||||    
T  18964891 tatggcaaatgaaggaatttggagttgaa 18964863  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 6947981 - 6947913
Alignment:
Q  168 ctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 236  Q
    |||||||||||| |||||| |||  |||| || || ||  | |||||||||||||||||||||||||||    
T  6947981 ctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaa 6947913  T

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