View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_26 (Length: 254)
Name: NF6581_high_26
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 6184673 - 6184436
Alignment:
| Q |
17 |
atctcaagccagattacttctagatatacacataatattatcaaaatgtccttcgtattacagtgacaaacaaaccggaattgaagttgtttaacagata |
116 |
Q |
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| T |
6184673 |
atctcaagccagattacttctagatatacacataatattatcaaaatgtccttcgtattacagtgacaaacaaaccggaattgaagttgtttaacagata |
6184574 |
T |
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| Q |
117 |
ataccttgttccatcaaatcctccaatataacagtactttgacgcgcttactccaccatcaggcccctgcattgaaataacattcttttgatgaatattg |
216 |
Q |
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| T |
6184573 |
ataccttgttccatcaaatcctccaatataacagtactttgacgcgcttactccaccatcaggcccctgcattgaaataacattcttttgatgaatattg |
6184474 |
T |
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| Q |
217 |
agaaacagaagtcttccgtaactaactcatcatttttt |
254 |
Q |
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| T |
6184473 |
agaaacagaagtcttccgtaactaactcatcatttttt |
6184436 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 39031473 - 39031547
Alignment:
| Q |
115 |
taataccttgttccatcaaatcctccaatataacagtactttgacgcgcttactccaccatcaggcccctgcatt |
189 |
Q |
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|||||||||||| | |||||||| ||||||||||| ||||||||||| | ||||||||||||||||| |||| |
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| T |
39031473 |
taataccttgttgcgtcaaatccaccaatataacaatactttgacgctgaaattccaccatcaggcccctacatt |
39031547 |
T |
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