View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_27 (Length: 238)
Name: NF6581_high_27
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 48907533 - 48907318
Alignment:
| Q |
7 |
tccaacgctcatccaaacgagcacttagccttttgctcattaaattatctctctaatctcatcttataaataagaaaacattgttgtttttactgtctca |
106 |
Q |
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| T |
48907533 |
tccaacgctcatccaaacgagcacttagccttttgctcattaaattatctctctaatctcatcttataaataagaaaacattgttgtttttactgtctca |
48907434 |
T |
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| Q |
107 |
atgataagaaacaacaacaacaatcaagttttattcactaagtgaggttggatgtgttaatgataagaaagagagagcatacattttaagatgtgctatt |
206 |
Q |
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| T |
48907433 |
atgataagaagaaacaacaacaatcaagttttattcactaagtgaggttggatgtgttaatgataagaaag--agagcatacattttaagatgtgctatt |
48907336 |
T |
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| Q |
207 |
aatttggtgatcaaattg |
224 |
Q |
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| T |
48907335 |
aatttggcgatcaaattg |
48907318 |
T |
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