View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_4 (Length: 511)
Name: NF6581_high_4
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 26550369 - 26549870
Alignment:
| Q |
1 |
ctttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatcaaggctcttattcaagctggagggttcccatcatcacactcttctgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26550369 |
ctttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatcaaggctcttattcaagctggagggtttccatcatcacactcttctgtat |
26550270 |
T |
|
| Q |
101 |
gaacttgaaacccttaaccagtaaatcctactttcatttcatctattccacttgactagtgttgtttcacttttattctcacatagttgtttaaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26550269 |
gaacttgaaacccttaaccagtaaatcctactttcatttcatctattccacttgactagtgttgtttcacttttattctcacatagttgtttaaattttc |
26550170 |
T |
|
| Q |
201 |
ttttggataggcaacagtggcttgtgcaacattacttggccttgagaggtaagataattcagttatgctgacttggtgtctagttcatggcatttttctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26550169 |
ttttggataggcaacagtggcttgtgcaacattacttggccttgagaggtaagataattcagttatgctgacttggtgtctagttcatggcatttttctc |
26550070 |
T |
|
| Q |
301 |
ttcactcttctgaaaattgcaattttcttaagaataatgtttctgtatttatttttaattgtttattatccaaatgcagaggcctctcagatcccatttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26550069 |
ttcactcttctgaaaattgcaattttcttaagaataatgtttctgtatttatttttaattgtttattatccaaatgcagaggcctctcagatcccatttt |
26549970 |
T |
|
| Q |
401 |
tggtcttgcagttgtgtatgctggtctgattatgtatgatgctcaggtgtgatcttcttctcagatcccattttttgcgttatttacttcatgtattcat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26549969 |
tggtcttgcagttgtgtatgctggtctgattatgtatgatgctcaggtgtgatcttcttctcagatcccattttttgcgttatttacttcatgtattcat |
26549870 |
T |
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