View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_5 (Length: 492)
Name: NF6581_high_5
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 37941558 - 37941988
Alignment:
| Q |
14 |
gaataaccaagagggtacttttgcagtggcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatgttgtatatat |
113 |
Q |
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| T |
37941558 |
gaataaccaagagggtacttttgcagtggcttttgtggtgtttgatcatgaattgttcgaaaggtgaaagcttggttttggctgtgcatgttgtatatat |
37941657 |
T |
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| Q |
114 |
tattgagaggctgtttaaaatgatcaaatgaagaagatagcaattggttgtgaatggaagaggatggaggaagaagattgtgtgcaacgggacgaagaag |
213 |
Q |
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| T |
37941658 |
tattgagaggctgtttaaaatgatcaactgaagaagatagaaattggttgtgaatggaagaggatggaggaagaagattgtgtgcaacgggacgaagaag |
37941757 |
T |
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| Q |
214 |
attataaggagggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttctggg |
313 |
Q |
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| T |
37941758 |
attataaggagggaatgttattgttgaagcagaagtaaagagatccaaccttgtttttgggaaatgatgagaagatgtgatgaaaggtggtagttctggg |
37941857 |
T |
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| Q |
314 |
ataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctcttgaacgtttctttgggt |
413 |
Q |
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| T |
37941858 |
ataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagttgtaggtgcacgccttgatgctcttgaacgtttctttgggt |
37941957 |
T |
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| Q |
414 |
tttgatttccaacctgcatgttgatgttgtt |
444 |
Q |
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| T |
37941958 |
tttgatttccaacctgcatgttgatgttgtt |
37941988 |
T |
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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 408
Target Start/End: Original strand, 39636986 - 39637085
Alignment:
| Q |
309 |
ctgggataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctcttgaacgtttctt |
408 |
Q |
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| T |
39636986 |
ctggtataccagtaaattcctgaaccatggctctgaaatttgtagtatctgtagtgagaactgtagtaggtgcacgtcttgaagctcttgatcttttctt |
39637085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 26257727 - 26257812
Alignment:
| Q |
311 |
gggataccagtgaatttttgaaccatggctctgaaatttgtagtgtctgttgttagaacagctgtaggtgcacgccttgatgctct |
396 |
Q |
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| T |
26257727 |
gggataccggtgaattcttgaaccatggctctaaaattcgaagtgtcggttgttagaactgtcgtaggtgctcttcttgatgctct |
26257812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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