View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_6 (Length: 441)
Name: NF6581_high_6
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 37888337 - 37888750
Alignment:
| Q |
13 |
aatatttagtcgtgcttgaaattgggaacggtgatgacctaatcttaaagattcaaatgagtttgcacattttaattttatactatatattggatataaa |
112 |
Q |
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| T |
37888337 |
aatatttagtcgtgcttgaaattgggaacggtgatgacctgatcttaaagattcaaatgagtttgcacattttaattttatactatatattggatataaa |
37888436 |
T |
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| Q |
113 |
atcattcttgaaatgaatatatgaaatattnnnnnnnngtatgtacgtttgagaatatctcatctattcatttcaaatttcaatttgcacacattcaagg |
212 |
Q |
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| T |
37888437 |
atcattcttgaaatgaatatatgaaatattaaaaaaaagtatgtacgtttgagaatatctcatctattcatttcaaatttcaattcgcacacattcaagg |
37888536 |
T |
|
| Q |
213 |
atagnnnnnnnnntctatcctttccctcttttatttttctgaaccaaacaagcatattttatttcattaatcaaatacggaactatacaacgaggagcat |
312 |
Q |
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| T |
37888537 |
atagaaaaaaaa-tctatcctttccctcttttatttttctgaaccaaacaaacatattttatttcattaatcaaatacggagctatacaatgaggagcat |
37888635 |
T |
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| Q |
313 |
aatcgaaaacttggcgactaacataagacaaaaccactttagctaaataatgagcagcgtgttggcttgcgttc--acaaactttaactcaaaattacaa |
410 |
Q |
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| T |
37888636 |
aatcgaaaacttggcgactaacataagacaaaaccactctagttaaataatgagcagcgtgctggcttgcgttcagacaaactttaactcaaaattacaa |
37888735 |
T |
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| Q |
411 |
tgtaaggttagaaag |
425 |
Q |
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| T |
37888736 |
tgtaaggctagaaag |
37888750 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 25848840 - 25848720
Alignment:
| Q |
306 |
ggagcataatcgaaaacttggcgactaacataagacaaaaccactttagctaaataatgagcag-cgtgttggcttgcgttc--acaaactttaactcaa |
402 |
Q |
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|||||||||| |||||||||| ||||| ||||||| ||| ||||| |||||| ||||||||| |||||| ||||| | | |||||||||| | ||| |
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| T |
25848840 |
ggagcataattgaaaacttggggactagcataagaaaaagccactcatgctaaagaatgagcagtcgtgttctcttgcctccgaacaaactttaccacaa |
25848741 |
T |
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| Q |
403 |
aattacaatgtaaggttagaa |
423 |
Q |
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| T |
25848740 |
agttacaatgtaaggatagaa |
25848720 |
T |
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