View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_8 (Length: 391)
Name: NF6581_high_8
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 47280466 - 47280835
Alignment:
| Q |
20 |
ttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacattagacttaaactcgagttca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280466 |
ttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacattagacttaaactcgagttca |
47280565 |
T |
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| Q |
120 |
gtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280566 |
gtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaa |
47280665 |
T |
|
| Q |
220 |
attgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280666 |
attgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagc |
47280765 |
T |
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| Q |
320 |
tccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttcctttgctactcca |
389 |
Q |
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| T |
47280766 |
tccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctcca |
47280835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 153 - 335
Target Start/End: Original strand, 49060519 - 49060699
Alignment:
| Q |
153 |
aaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgc |
252 |
Q |
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| T |
49060519 |
aaaccagatattcaaaaacattttgataatgtaaaatttgaaataaaattcagtaaagctcgaggaaattgataagatataaaaattgttt--gtgttgc |
49060616 |
T |
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| Q |
253 |
agagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaa |
335 |
Q |
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| T |
49060617 |
aggcagagtgaagaacatactgtcaatgcctaactgattaacagcagcaacaaacttgcggtgcagctccacagaccaaacaa |
49060699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 184 - 344
Target Start/End: Original strand, 47274917 - 47275075
Alignment:
| Q |
184 |
taaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcct |
283 |
Q |
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| T |
47274917 |
taaaatgagaaataaaaatcggtcaagctcgaggaaattgataggatataaaaattgttt--gtgttgcggacagagtggagaacatactgtcaatgcct |
47275014 |
T |
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| Q |
284 |
aactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggact |
344 |
Q |
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| T |
47275015 |
aactgattaacagcagcaacaaatttgtggtgcagctccacagaccaaacagactgggact |
47275075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 47274685 - 47274801
Alignment:
| Q |
21 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacattagacttaaactcgagttcag |
120 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
47274685 |
tcccttgtaatattttcaacattcatcaaaccaagaatcttttcaggtacagcctctgccagtaaaacaacattaacatgagact--cactcaagttcag |
47274782 |
T |
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| Q |
121 |
taatggaatacttcatgac |
139 |
Q |
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||||| || |||||||||| |
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| T |
47274783 |
taatgaaacacttcatgac |
47274801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 49060339 - 49060411
Alignment:
| Q |
21 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacat |
93 |
Q |
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||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
49060339 |
tcccttgtaatattttcgacattcatcatatcaagaatttttttgggtacagcctctgcaagtaaaacaacat |
49060411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 2894009 - 2893950
Alignment:
| Q |
20 |
ttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgc |
79 |
Q |
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||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
2894009 |
ttcccttgtcagattttcaacattcatcagttcaagaatctttttgggtacagcctctgc |
2893950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2889447 - 2889392
Alignment:
| Q |
21 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctc |
76 |
Q |
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|||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
2889447 |
tcccttgtcagattttcaacattcatcagttcaagaatctttttcggtacagcctc |
2889392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 48869611 - 48869682
Alignment:
| Q |
21 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaaca |
92 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||||||| |||| ||| ||||| || |||| |||| |
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| T |
48869611 |
tcccttgtaagattttcaacattcatcaattcaagaatcttttttggtatagcatctgcaagcaaaataaca |
48869682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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