View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_high_9 (Length: 386)
Name: NF6581_high_9
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 3643453 - 3643097
Alignment:
| Q |
21 |
agagtgcatcaatattcacaagctcgtaatctttttcacatttgtatcttctgctcattttcacttgttgaactcttaacatgacggatagttgagccgt |
120 |
Q |
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| T |
3643453 |
agagtgcatcaatattcacaagctcgtaatctttttcacatctgtatcttctgctcattttcacttgttgaactcttaacatgacggatagttgagccgt |
3643354 |
T |
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| Q |
121 |
ctagaaacatccctcatggattgtaagttcgcttagtaacttgcgagttttgattcttatacaccgcaaatttcttctttattcctgtaacattatcatc |
220 |
Q |
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| T |
3643353 |
ctagaaacatccctcatggattgtaagttcgcttagtaacttgcgagttttgattcttatacaccgcaaatttcttctttattcctgtaacattatcatc |
3643254 |
T |
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| Q |
221 |
gatcaaagtaaataaatacacacatagaccgtcatgaaaccaacaacaacttatgaattgccaaatattaaattcatgatattcatgattattatatcat |
320 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3643253 |
aatcaaagaaaataaatacacacataggccgtcatgaaaccaataacaacttatgaattgccaaatattaaattcatgatattcatgattattatatcat |
3643154 |
T |
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| Q |
321 |
tcatctttgggttcattcattccttttgagtcccactgttgtgtctcttagaattat |
377 |
Q |
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| T |
3643153 |
tcatctttgggttcattcattccttttgagtcccactgttgtgtctcttagaattat |
3643097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 44878665 - 44878605
Alignment:
| Q |
176 |
cttatacaccgcaaatttcttctttattcctgtaacattatcatcgatcaaagtaaataaa |
236 |
Q |
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| T |
44878665 |
cttatacaccacaaatttcttctttattcctataacattatcatcaatcacagtaaataaa |
44878605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 44881256 - 44881316
Alignment:
| Q |
176 |
cttatacaccgcaaatttcttctttattcctgtaacattatcatcgatcaaagtaaataaa |
236 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
44881256 |
cttatacaccacaaatttcttctttattcctataacattatcatcaatcacagtaaataaa |
44881316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 44878760 - 44878715
Alignment:
| Q |
48 |
aatctttttcacatttgtatcttctgctcattttcacttgttgaac |
93 |
Q |
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| T |
44878760 |
aatctttttcacatttctatcttctgtttattttcacttgttgaac |
44878715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 44881161 - 44881206
Alignment:
| Q |
48 |
aatctttttcacatttgtatcttctgctcattttcacttgttgaac |
93 |
Q |
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| T |
44881161 |
aatctttttcacatttctatcttctgtttattttcacttgttgaac |
44881206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 33987770 - 33987717
Alignment:
| Q |
310 |
tattatatcattcatctttgggttcattcattccttttgagtcccactgttgtg |
363 |
Q |
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| T |
33987770 |
tattatatctttcatctttgtgttcattcatttgttttgagtgccacagttgtg |
33987717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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