View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_11 (Length: 383)
Name: NF6581_low_11
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 37842900 - 37842552
Alignment:
| Q |
17 |
atagaagatagaagatactaataataattgtaacttatttttgtcacgaaagaagaaggagaacacatcttataattttgctttagatttatccattctt |
116 |
Q |
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| T |
37842900 |
atagaagatagaagatactaataataattgtaacttatttttgtcacgaaagaagaaggagaacacatcttataattttgctttagatttatccattctt |
37842801 |
T |
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| Q |
117 |
gagaaaaaagaaacacgcaccgttacttgatcatttaaatatttctttttgttgaaacaagatcatcatttcaagcctaacattttctttctaaacatac |
216 |
Q |
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| T |
37842800 |
gagaaaaaagaaacacgcaccgttacttgatcatttaaatatttctttttgttgaaacaagatcatcatttcaagcctaacattttctttctaaacatac |
37842701 |
T |
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| Q |
217 |
taaaaataataataatattgcatagnnnnnnnnnnnnnnnnnncaaagaaaatattatgacacggcgtggtaatagacacttgaagtaaagggaccatat |
316 |
Q |
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| T |
37842700 |
taaaaataat---aatattgcatag-tttttttttctttttttcaaagaaaatattatgacacggcgtggtaatagatacttgaagtaaagggaccatat |
37842605 |
T |
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| Q |
317 |
gtttgtatcaaacatgaattgctagatgctagaaataaaagtttaatatatat |
369 |
Q |
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| T |
37842604 |
gtttgtatcaaacatgaattgctagatgctagaaataaaagtttaatatatat |
37842552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 37998961 - 37998932
Alignment:
| Q |
340 |
agatgctagaaataaaagtttaatatatat |
369 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37998961 |
agatgctagaaataaaagtttaatatatat |
37998932 |
T |
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