View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_12 (Length: 377)
Name: NF6581_low_12
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 62 - 368
Target Start/End: Complemental strand, 54791988 - 54791682
Alignment:
| Q |
62 |
gtacctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctataa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54791988 |
gtacctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctataa |
54791889 |
T |
|
| Q |
162 |
gnnnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
261 |
Q |
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| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791888 |
gtttttttctactcttctgcttcaatgatcatacaagaatagaaaaaaatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
54791789 |
T |
|
| Q |
262 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791788 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
54791689 |
T |
|
| Q |
362 |
tatactg |
368 |
Q |
| |
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||||||| |
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| T |
54791688 |
tatactg |
54791682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 66 - 366
Target Start/End: Original strand, 54777160 - 54777462
Alignment:
| Q |
66 |
ctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctat--aagn |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
54777160 |
ctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctatgcaagt |
54777259 |
T |
|
| Q |
164 |
nnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
263 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777260 |
ttttttctactcttctgcctcaatgatcgtacaagaatagaaaaacatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
54777359 |
T |
|
| Q |
264 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatactta |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777360 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtcattctcctccagcatcctacttaaggacatggtcttctcattatactta |
54777459 |
T |
|
| Q |
364 |
tac |
366 |
Q |
| |
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||| |
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|
| T |
54777460 |
tac |
54777462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 170 - 365
Target Start/End: Complemental strand, 52284538 - 52284343
Alignment:
| Q |
170 |
ctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcagattcta |
269 |
Q |
| |
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||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
52284538 |
ctactctactgcttcaatgaacgtacaagaatataaaaacatacatggccaaacttgaagcacacggcctttacatacaataagacaaaatcagattcta |
52284439 |
T |
|
| Q |
270 |
acagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatacttata |
365 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
52284438 |
acagaaattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaagacatggtcttctcgttatacttata |
52284343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 799734 - 799610
Alignment:
| Q |
244 |
atacaataaggcaaaatcagattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggaca |
343 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
799734 |
atacaataaggcaaaatcagattataacagaaattatacaaaccttcaacaaaagcactgtgaagtttgtctttctcctccagcatcctactcaaggaca |
799635 |
T |
|
| Q |
344 |
tggtcttctcattatacttatactg |
368 |
Q |
| |
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| ||||||||||||||| ||||||| |
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| T |
799634 |
tagtcttctcattatacctatactg |
799610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 799836 - 799796
Alignment:
| Q |
62 |
gtacctcctcacgggctttacgctgcatactccttgactct |
102 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
799836 |
gtacctcatcacgagctttacgctgcatgctccttgactct |
799796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 52284655 - 52284615
Alignment:
| Q |
62 |
gtacctcctcacgggctttacgctgcatactccttgactct |
102 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
52284655 |
gtacctcttcacgagctttacgctgcatgctccttgactct |
52284615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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