View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_13 (Length: 376)
Name: NF6581_low_13
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 34358489 - 34358724
Alignment:
| Q |
44 |
caagataaaggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat |
143 |
Q |
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| T |
34358489 |
caagataatggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat |
34358588 |
T |
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| Q |
144 |
aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtgccatgcaagcagc- |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34358589 |
aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagttgtgccatgcaagcagca |
34358688 |
T |
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| Q |
243 |
nnnnnnntggagattcatcgccgaattgcatgctac |
278 |
Q |
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| T |
34358689 |
aaaaaaatggagattcatcaccgaattgcatgctac |
34358724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 34352854 - 34353040
Alignment:
| Q |
44 |
caagataaaggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat |
143 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| |||||| |||||||||||||||||||||||| |||||||| |
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| T |
34352854 |
caagataaagaaaccaaaatgtttaaaaaggaagaagagaacaactaatgctgtcacacacac----ctacctgtctttgacactacaacatggctccat |
34352949 |
T |
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| Q |
144 |
aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtgccatg |
234 |
Q |
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| T |
34352950 |
aagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtaccatg |
34353040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
112 |
tacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
212 |
tttttcctatgagctg |
227 |
Q |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 34358750 - 34358796
Alignment:
| Q |
309 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaac |
355 |
Q |
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| T |
34358750 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaac |
34358796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 34353129 - 34353169
Alignment:
| Q |
313 |
gtgtgaaaccgacctgtgtaatatcatcggcaatattgaga |
353 |
Q |
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| T |
34353129 |
gtgtgaaaccgacctgtgtaatatcatcggcaatattgaga |
34353169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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