View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_low_14 (Length: 375)

Name: NF6581_low_14
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_low_14
NF6581_low_14
[»] chr3 (2 HSPs)
chr3 (205-358)||(31872951-31873104)
chr3 (11-138)||(31872738-31872865)
[»] chr4 (4 HSPs)
chr4 (16-135)||(33464196-33464314)
chr4 (40-131)||(48569716-48569808)
chr4 (241-277)||(33464332-33464368)
chr4 (220-267)||(48569814-48569861)
[»] chr5 (3 HSPs)
chr5 (16-135)||(6007038-6007156)
chr5 (66-138)||(35757617-35757689)
chr5 (241-277)||(6006984-6007020)
[»] chr2 (8 HSPs)
chr2 (38-135)||(8145852-8145950)
chr2 (34-135)||(30545031-30545133)
chr2 (34-135)||(44154624-44154726)
chr2 (68-136)||(29057945-29058013)
chr2 (76-136)||(29053375-29053434)
chr2 (220-267)||(8145949-8145996)
chr2 (220-267)||(44154578-44154625)
chr2 (220-267)||(30545132-30545179)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 205 - 358
Target Start/End: Original strand, 31872951 - 31873104
Alignment:
Q  205 tgcaatggatctaaccttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaaacctaatgagactgcgcagaagcaactgcgattagga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872951 tgcaatggatctaaccttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaaacctaatgagactgcgcagaagcaactgcgattagga 31873050  T
Q  305 agagagagtgaagcttgtttcggcttttatagtaaaatgtaaaaccctaattat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31873051 agagagagtgaagcttgtttcggcttttatagtaaaatgtaaaaccctaattat 31873104  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 31872738 - 31872865
Alignment:
Q  11 cacagaaaatgaaaaacaaaacttaagatcacttgatgttgtcgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872738 cacagaaaatgaaaaacaaaacttaagatcacttgatgttgtcgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaac 31872837  T
Q  111 ctcctcatacgcttcttcttccactgca 138  Q
    ||||||||||||||||||||||||||||    
T  31872838 ctcctcatacgcttcttcttccactgca 31872865  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 33464196 - 33464314
Alignment:
Q  16 aaaatgaaaaacaaaacttaagatcacttgatgttgtcgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcct 115  Q
    |||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||    
T  33464196 aaaatgaaaaacaaaact-aatatcacttgatgttgttggagaacaaacacactacttggatcgatgtctcatctttcgttgcttcctcttcaacctcct 33464294  T
Q  116 catacgcttcttcttccact 135  Q
    |||| |||||||||||||||    
T  33464295 catatgcttcttcttccact 33464314  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 48569716 - 48569808
Alignment:
Q  40 cacttgatgttgt-cgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttc 131  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  48569716 cacttgatgttgttcggagaacaaacacactacttggatctctatctcatctttcgttgcttcctcttcaacctcctcatatgcttcttcttc 48569808  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 33464332 - 33464368
Alignment:
Q  241 aaacggatgagaatttgatgagagaaaacctaatgag 277  Q
    |||||||||||||||||||||||||||||||| ||||    
T  33464332 aaacggatgagaatttgatgagagaaaacctagtgag 33464368  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 48569814 - 48569861
Alignment:
Q  220 cttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaa 267  Q
    |||||||| |||| || ||||||||| |||||||||||||||||||||    
T  48569814 cttggcacacatggttgttgaaaacgtatgagaatttgatgagagaaa 48569861  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 6007156 - 6007038
Alignment:
Q  16 aaaatgaaaaacaaaacttaagatcacttgatgttgtcgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcct 115  Q
    |||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||  ||||||||||||||  |||||||||||||| ||||    
T  6007156 aaaatgaaaaacaaaact-aatatcacttgatgttgttggagaacaaacacactacttggatcgatgtctcatctttcgttgcttcctcttcaacatcct 6007058  T
Q  116 catacgcttcttcttccact 135  Q
    |||| |||||||||||||||    
T  6007057 catatgcttcttcttccact 6007038  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 35757617 - 35757689
Alignment:
Q  66 cactacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttccactgca 138  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35757617 cactacttagatctctgtctcatctttcggcgcttcctcttcaatctcctcatacgcttcttcttccactgca 35757689  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 6007020 - 6006984
Alignment:
Q  241 aaacggatgagaatttgatgagagaaaacctaatgag 277  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6007020 aaacggatgagaatttgatgagagaaaacctagtgag 6006984  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 8145852 - 8145950
Alignment:
Q  38 atcacttgatgttgt-cgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttccact 135  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  8145852 atcacttgatgttgttcggagaacaaacagactacttggatctctgtctcatctttcgttgcttcctcttcaacctcctcatatgcttcttcttccact 8145950  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 30545031 - 30545133
Alignment:
Q  34 taagatcacttgatgttgt-cgaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttcc 132  Q
    ||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||| ||||||||||||    
T  30545031 taagatcacttgatgttgttcggataacaaacacactacttggatctttgtctcatcttttgttgcttcctcttcaacctcctcatatgcttcttcttcc 30545130  T
Q  133 act 135  Q
    |||    
T  30545131 act 30545133  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 44154726 - 44154624
Alignment:
Q  34 taagatcacttgatgttgtc-gaagaacaaacacactacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttcc 132  Q
    |||||||||||||||||||  | | ||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  44154726 taagatcacttgatgttgtttggataacaaacacactaattggatctttgtctcatctttcgttgcttcctcttcaacctcctcatatgcttcttcttcc 44154627  T
Q  133 act 135  Q
    |||    
T  44154626 act 44154624  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 29057945 - 29058013
Alignment:
Q  68 ctacttggatctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttccactg 136  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29057945 ctacttagatctctgtctcatctttcggcgcttcctcttcaacctcctcatgcgcttcttcttccactg 29058013  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 29053375 - 29053434
Alignment:
Q  76 atctctgtctcatctttcggcgcttcctcttcaacctcctcatacgcttcttcttccactg 136  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  29053375 atctctgtctcatctt-cggcgctttctcttcaacctcctcatgcgcttcttcttccactg 29053434  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 8145949 - 8145996
Alignment:
Q  220 cttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaa 267  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    
T  8145949 cttggcacgcatggttgttgaaaacggatgagaatttgatgagagaaa 8145996  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 44154625 - 44154578
Alignment:
Q  220 cttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaa 267  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    
T  44154625 cttggcacgcatggttgttgaaaacggatgagaatttgatgagagaaa 44154578  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 30545132 - 30545179
Alignment:
Q  220 cttggcacgcatgattcttgaaaacggatgagaatttgatgagagaaa 267  Q
    |||||||| |||| || ||| |||||||||||||||||||||||||||    
T  30545132 cttggcacacatggttgttgtaaacggatgagaatttgatgagagaaa 30545179  T

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