View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_low_16 (Length: 346)

Name: NF6581_low_16
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_low_16
NF6581_low_16
[»] scaffold0155 (1 HSPs)
scaffold0155 (2-305)||(431-734)
[»] chr4 (3 HSPs)
chr4 (2-284)||(42390193-42390475)
chr4 (48-289)||(42378642-42378883)
chr4 (2-305)||(42394541-42394841)


Alignment Details
Target: scaffold0155 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 734 - 431
Alignment:
Q  2 catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  734 catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgataccacaacactcctcatcacactcttaacaatt 635  T
Q  102 tccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctat 201  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| || |||||||||| |||||||||  |||||||||||||||||||||||||||    
T  634 tccacaatcatttagtacttatatatcttcttcttcaaatcaaagtcccataacctacccctagggccgccgggccttcctatcttcggtaacctcctat 535  T
Q  202 ctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcggcatcgtcataac 301  Q
    ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  534 ctctcgatcctgaactccacacttacttcgtcgggctagcccaaacccacggcccaattttcaagctcaggcttggtagcaaactcggtatcgtcataac 435  T
Q  302 ttca 305  Q
    ||||    
T  434 ttca 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 42390475 - 42390193
Alignment:
Q  2 catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42390475 catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacactcctcatcacactcttaacaatt 42390376  T
Q  102 tccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctat 201  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  42390375 tccacaatcctttggtacttatatatcttcttcttcaaatcaaagtcccagaacctaccccaagggccgccgggccttcctatcttcggtaacctcctat 42390276  T
Q  202 ctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaa 284  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42390275 ctctcgatcccgaactccacacttacttcgcctggctagcccaagcccacggcccaattttcaagctcaggcttggtagcaaa 42390193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 42378883 - 42378642
Alignment:
Q  48 aaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatttccacaatcatttgatacttatatatcttcttcttcaaatcaaagt 147  Q
    ||||||||||||||||||||||| |||||| |||||||  |||||||||||||||||| ||||| ||| ||||||||| ||| |||||||||||| ||      
T  42378883 aaagattggtacaaaggtgacacaacaacactcctcatagcactcttaacaatttccataatcacttggtacttatatctctacttcttcaaatctaaaa 42378784  T
Q  148 cacagaacctacccccagggccgccatgccttcctatcttcggtaacctcctatctctcgaccccgaactccacacttacttcgtcgggctagcccaagc 247  Q
    | || |||||||| ||||| || ||  || |||| |||||||| ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||||||    
T  42378783 cccaaaacctaccaccaggcccaccgggctttcccatcttcggaaaccttctatcactcgacccagaacttcacacttacttcgccggactagcccaagc 42378684  T
Q  248 ccacagcccaattttcaagctcaggcttggtagcaaactcgg 289  Q
    |||| ||||||||| ||||||| |||| || |||||||||||    
T  42378683 ccacggcccaatttacaagctctggctcggaagcaaactcgg 42378642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 42394841 - 42394541
Alignment:
Q  2 catcatgattccactcacaatttctttgttcgaaaacacgaacatgaaagattggtacaaaggtgacaccacaacaatcctcatcacactcttaacaatt 101  Q
    ||||||||||||||||||| ||||||||||| ||||||      ||||||||||||||||  |||||||||||||| | |||||  |||||||||| |||    
T  42394841 catcatgattccactcacattttctttgttcaaaaaca------tgaaagattggtacaactgtgacaccacaacactactcataccactcttaaccatt 42394748  T
Q  102 tccacaatcatttgatacttatatatcttcttcttcaaatcaaagtcacagaacc---tacccccagggccgccatgccttcctatcttcggtaacctcc 198  Q
    |||||||||||||| ||  | ||| ||| |||||||||||||||  | || |||    |||| ||||| ||| |  ||||||||||  |||||||||| |    
T  42394747 tccacaatcatttggtatatgtatctctacttcttcaaatcaaaaccccaaaacaacttaccaccaggcccgtcgggccttcctattatcggtaaccttc 42394648  T
Q  199 tatctctcgaccccgaactccacacttacttcgtcgggctagcccaagcccacagcccaattttcaagctcaggcttggtagcaaactcggcatcgtcat 298  Q
    |||| ||||| || || || ||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||  |    
T  42394647 tatcactcgagccagagcttcacacttacttcaccggcctagcccaagcccacggcccaattttcaagctcaggcttggtagcaaacttggcatcgtgtt 42394548  T
Q  299 aacttca 305  Q
    |||||||    
T  42394547 aacttca 42394541  T

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