View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_18 (Length: 328)
Name: NF6581_low_18
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 6037006 - 6036735
Alignment:
| Q |
17 |
aggtgaaatatctagatatcgtgattaaaagatggatcaaatcatcagatatctctctcaaattttatttccatccgaacaacggctatgtgatcacttc |
116 |
Q |
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| T |
6037006 |
aggtgaaatatctagataccgtgattaaaagatggatcaaatcatcagatatctctctcaaattttatttccatccgaacaacggctatgtgatcacttc |
6036907 |
T |
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| Q |
117 |
attttgggtttcacctcctctgctactcgttttttcacagagattttccacggagcaatgtttcagcttattaattttgctgttgcagttgctgatggaa |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6036906 |
attttgggtttcacctcctctgctactcattttttcacagagattttccacggagcaatgtttcagcttattaattttgctgttgcagttgctgatggaa |
6036807 |
T |
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| Q |
217 |
gcccttcaatttggtgtttattcaaaatgattgcgatttgagacattgcattatccgataccaaaattccaa |
288 |
Q |
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| T |
6036806 |
gcccttcaatttggcgtttattgaaaatgattgcgatttgagacattgcattatccgataccaaaattccaa |
6036735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 31475173 - 31474921
Alignment:
| Q |
18 |
ggtgaaatatctagatatcgtgattaaaagatggatcaaatcatcagatatctctctcaa-attttatttccatccgaacaacggctatgtgatcacttc |
116 |
Q |
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|||||||||| |||||| |||||||||| ||||||| | ||||||| |||||||| || ||| ||||||||| |||||||| || |||||||| || |
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| T |
31475173 |
ggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtgatcatgtc |
31475074 |
T |
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| Q |
117 |
attttgggtttcacctcctctgctactcgttttttcacagagattttccacggagcaatgtttcagcttattaattttgctgttgcagttgctgatggaa |
216 |
Q |
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| T |
31475073 |
ttttcaggtttcgcttcctctgctactcgttgtttcacagaggttttccacggagcaacgtttcagcttctgaatttcgctgatgcagttgctgatggaa |
31474974 |
T |
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| Q |
217 |
gcccttcaatttggtgtttattcaaaatgattgcga--tttgagacattgcat |
267 |
Q |
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| T |
31474973 |
gcccttccatttggtgtttattcaaaatgctcgcaatctttgagacattgcat |
31474921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 287
Target Start/End: Complemental strand, 40842703 - 40842461
Alignment:
| Q |
48 |
atggatcaaatcatcagatatctctctcaa-attttatttccatccgaacaacggctatgtgatcacttcattttgggtttcacctcctctgctactcgt |
146 |
Q |
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| T |
40842703 |
atggatcacagcatcagaaatcgctcttaagattctatttccatttgaacaacgactctgtgatcatgtcttttcaggtttcgcctcctctgctactcgt |
40842604 |
T |
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| Q |
147 |
tttttcacagagattttccacggagcaatgtttcagcttattaattttgctgttgcagttgctgatggaagcccttcaatttggtgtttattcaaaatga |
246 |
Q |
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| T |
40842603 |
tgtttcacagaggttttccacggatcaacatttcagcttctaaattttgctaatgcagttgctgatggaagcccttccatttggtgtttattcaaaatgc |
40842504 |
T |
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| Q |
247 |
ttgcga--tttgagacattgcattatccgataccaaaattcca |
287 |
Q |
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| T |
40842503 |
ttgcaatctttgagactttgcatcatctgatatcgaaattcca |
40842461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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