View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_19 (Length: 322)
Name: NF6581_low_19
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 140 - 312
Target Start/End: Complemental strand, 26550518 - 26550346
Alignment:
| Q |
140 |
agatatggtttgaaaaagtgtttataggtggggagacatccctcattgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatatta |
239 |
Q |
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| T |
26550518 |
agatatggtttgaaaaagtgtttataggtggggagacatccctcatcgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatattt |
26550419 |
T |
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| Q |
240 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtg |
312 |
Q |
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| T |
26550418 |
ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtg |
26550346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 26550679 - 26550558
Alignment:
| Q |
18 |
gatatgacctaaacatgttctcaaaaacgtgttttaagatggtattagagtttatcaaatattcgttaggctacttttacacactatcgtgtgtcactca |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26550679 |
gatatggcctaaacatgttctcaaaaacgtgttttaagatggtattagagtttatcaaatattcgttagcctacttttacacactatcgtgtgtcactca |
26550580 |
T |
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| Q |
118 |
tgttacatgccagatgtttagt |
139 |
Q |
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| T |
26550579 |
tgttacatgccagatgtttagt |
26550558 |
T |
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