View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_20 (Length: 303)
Name: NF6581_low_20
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 41044891 - 41045163
Alignment:
| Q |
14 |
agataacaaaatgcgaaaagaatttttatttttaaaagcaaaaggagctttattaatgcgaaatactcaaatacacaaggcaagccatgagaaaggctta |
113 |
Q |
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| T |
41044891 |
agataacaacatgcgaaaagaatttttatttttaaaagcaaaaggagctttattaatgctaaatactcaaatacacaaggcaagccatgagaaaggctta |
41044990 |
T |
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| Q |
114 |
cagcaaaagcacaaattacattgtcactggttacatcaaaagaatgtaatccatagaaaccaccacacttactggtaccaattcttgaactgatattata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41044991 |
cagcaaaagcacaaattacattgtcactggttacatcaaaagaatgtaatccatagaaaccaccacacttactggtaccaattcttgaactgatattata |
41045090 |
T |
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| Q |
214 |
actctacctattcattaagaattgacaatagacagcatgcaaaaacaatccaaaatgatactatactcccact |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045091 |
actctacctattcattaagaattgacaatagacagcatgcaaaaacaatccaaaatgatactatactcccact |
41045163 |
T |
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