View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_21 (Length: 300)
Name: NF6581_low_21
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 50320038 - 50320331
Alignment:
| Q |
1 |
ttggacaggggtaagtgttacggtgtgtgggagggtgttaatgataccggaagttgatttaccggtgaaggtttacgatgaaataactgacacgtggcgg |
100 |
Q |
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| T |
50320038 |
ttggacaggggtaagtgttacggtgtgtgggagggtgttaatgataccggaagttgatttaccggtgaaggtttacgatgaaatgactgacacgtggcgg |
50320137 |
T |
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| Q |
101 |
tgtgtgggtggtgagaagttacctagaaatggaatgaagaaaccgtttattgccaagggtttggaggatcgaatctatgttgtgtggcatggtttgaaag |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
50320138 |
tgtgtgggtggtgagaggttacctagaaatggaatgaagaaaccgtttattgcaaagggtttggaggatcaaatctatgtggtgtggcatggtttgaaag |
50320237 |
T |
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| Q |
201 |
tggttatcggtaatgttgttgttgatgatgatcataatgtgaaggtgacgtggcaggttttggagggaccagcagaagcatttggagtattatc |
294 |
Q |
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||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50320238 |
tggttattggtaatgttgttgttgttgatgatgatcatgtgaaggtgacgtggcaggttttggagggaccagcagaagcatttggagaattatc |
50320331 |
T |
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