View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_22 (Length: 300)
Name: NF6581_low_22
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 36 - 284
Target Start/End: Complemental strand, 6184246 - 6183998
Alignment:
| Q |
36 |
gagagaaataagactaaaagtaataagtgtatgaactaattgagagtatttaatggtagcaagtactcacagccactggaccttcaattctcatcagggg |
135 |
Q |
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| T |
6184246 |
gagagaaataagactaaaagtaacaagtgtatgaactaattgagagtatttaatggtagcaagtactcacagccactggaccttcaattctcatcagggg |
6184147 |
T |
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| Q |
136 |
aaccttaggaaaaacaacagtcccttcgggaatagcatacacctcaacatcggaacagtcaattcctctaagatagtcaaagaaaccatcctatgattta |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184146 |
aaccttaggaaaaacaacagtcccttcgggaatagcatacacctcaacatcggaacagtcaattcctctaagatagtcaaagaaaccatcctatgattta |
6184047 |
T |
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| Q |
236 |
aatttaatccataattagcaaattcaaattatacttttgaagggataat |
284 |
Q |
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| T |
6184046 |
aatttaatccataattagcaaattcaaattatacttttgaagggataat |
6183998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 39031848 - 39031980
Alignment:
| Q |
96 |
aagtactcacagccactggaccttcaattctcatcaggggaaccttaggaaaaacaacagtcccttcgggaatagcatacacctcaacatcggaacagtc |
195 |
Q |
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||||||||||||| || |||||||||| ||| | || ||| | ||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||| |
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| T |
39031848 |
aagtactcacagcaaccggaccttcaactctaagcaagggtatcttaggaaaaacaactgtcccctcgggaatagcataaacctcaacatcagagcagtc |
39031947 |
T |
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| Q |
196 |
aattcctctaagatagtcaaagaaaccatccta |
228 |
Q |
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| T |
39031948 |
aagtcctctaagatagtcaaagaatgcatccta |
39031980 |
T |
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