View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_24 (Length: 269)
Name: NF6581_low_24
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_24 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 727 - 580
Alignment:
| Q |
13 |
catcacattaatatgtcaaatagaaagaacagaaaaattccaatatattatatagcaacttatcaaacatggtggggttgtcacgagataaagagatnnn |
112 |
Q |
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| T |
727 |
catcacattaatatgtcaaatagaaagaacagaaaaattccaatatattatatagcaacttatcaaacatggtggggttgtcacgagataaagagataaa |
628 |
T |
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| Q |
113 |
nnnntctcaaattatataccatgcaggtggtaaaatcttagggataca |
160 |
Q |
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| T |
627 |
aaaatctcaaattatataccatgcaggtggtaaaatcttagggataca |
580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 578 - 536
Alignment:
| Q |
209 |
tatattaataatagatagaaaaatcaatgctcaaccataatct |
251 |
Q |
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| T |
578 |
tatattaataatagatagaaaaatcaatgctcaaccataatct |
536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 6369521 - 6369471
Alignment:
| Q |
117 |
tctcaaattatataccatgcaggtggtaaaatcttagggatacaataattt |
167 |
Q |
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| T |
6369521 |
tctctaattctataccatgcagatggtaaaatcctagggatacaataattt |
6369471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 6369772 - 6369686
Alignment:
| Q |
18 |
cattaatatgtcaaatagaaagaacagaaaaattccaatatattatatagcaacttatcaaacatggtggggttgtcacgagataaagagat |
109 |
Q |
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| T |
6369772 |
cattaatatgttaaatagaaagaaaataaaaatccca--atattatatagcaagctaccaaaca---tggggttgtcacgagaaaaagagat |
6369686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 6377986 - 6377936
Alignment:
| Q |
117 |
tctcaaattatataccatgcaggtggtaaaatcttagggatacaataattt |
167 |
Q |
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| T |
6377986 |
tctctaattctataccatgcagatggtaaaatcctagggatacaataattt |
6377936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 6378237 - 6378151
Alignment:
| Q |
18 |
cattaatatgtcaaatagaaagaacagaaaaattccaatatattatatagcaacttatcaaacatggtggggttgtcacgagataaagagat |
109 |
Q |
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| T |
6378237 |
cattaatatgttaaatagaaagaaaataaaaatccca--atattatatagcaagctaccaaaca---tggggttgtcacgagaaaaagagat |
6378151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 6369466 - 6369434
Alignment:
| Q |
192 |
tactctagaacctcaaatatattaataatagat |
224 |
Q |
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| T |
6369466 |
tactgtagaacctcaaatatattaataatagat |
6369434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 6377931 - 6377899
Alignment:
| Q |
192 |
tactctagaacctcaaatatattaataatagat |
224 |
Q |
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| T |
6377931 |
tactgtagaacctcaaatatattaataatagat |
6377899 |
T |
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