View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_low_3 (Length: 572)

Name: NF6581_low_3
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_low_3
NF6581_low_3
[»] chr2 (12 HSPs)
chr2 (10-319)||(4939195-4939504)
chr2 (10-319)||(5024285-5024594)
chr2 (334-555)||(4941673-4941894)
chr2 (334-555)||(5026753-5026974)
chr2 (317-555)||(16157717-16157955)
chr2 (389-549)||(23681887-23682047)
chr2 (366-432)||(28018617-28018683)
chr2 (366-432)||(20482504-20482570)
chr2 (83-164)||(21807636-21807717)
chr2 (119-182)||(23682248-23682311)
chr2 (473-527)||(18498780-18498834)
chr2 (473-527)||(26360451-26360505)
[»] chr8 (8 HSPs)
chr8 (289-555)||(18551355-18551621)
chr8 (366-435)||(15194347-15194416)
chr8 (368-439)||(15886233-15886304)
chr8 (469-527)||(613286-613344)
chr8 (469-527)||(619680-619738)
chr8 (473-516)||(15886338-15886381)
chr8 (473-527)||(25574808-25574862)
chr8 (368-432)||(44230396-44230460)
[»] chr1 (8 HSPs)
chr1 (248-555)||(26214785-26215092)
chr1 (296-555)||(6531943-6532205)
chr1 (299-555)||(9802608-9802861)
chr1 (389-549)||(37737698-37737858)
chr1 (366-435)||(49639865-49639934)
chr1 (116-189)||(37737425-37737498)
chr1 (125-192)||(9802434-9802501)
chr1 (473-527)||(52778969-52779023)
[»] chr7 (5 HSPs)
chr7 (366-555)||(19813566-19813755)
chr7 (389-549)||(3004564-3004724)
chr7 (116-189)||(3004924-3004997)
chr7 (366-438)||(16257774-16257846)
chr7 (470-536)||(20137740-20137806)
[»] chr3 (6 HSPs)
chr3 (326-438)||(23374177-23374289)
chr3 (366-435)||(53979365-53979434)
chr3 (366-438)||(31193957-31194029)
chr3 (366-438)||(52774284-52774356)
chr3 (473-527)||(19585648-19585702)
chr3 (473-525)||(44667447-44667499)
[»] chr6 (5 HSPs)
chr6 (26-441)||(31273428-31273841)
chr6 (366-432)||(6343588-6343654)
chr6 (366-438)||(26134696-26134768)
chr6 (368-402)||(6568525-6568559)
chr6 (366-443)||(28561296-28561373)
[»] chr5 (9 HSPs)
chr5 (366-556)||(23884346-23884536)
chr5 (474-554)||(31327663-31327743)
chr5 (474-554)||(31376330-31376410)
chr5 (67-189)||(23884047-23884169)
chr5 (366-549)||(36731534-36731717)
chr5 (473-527)||(15449983-15450037)
chr5 (366-432)||(16989669-16989735)
chr5 (88-189)||(20322631-20322732)
chr5 (94-162)||(26465351-26465419)
[»] scaffold0164 (1 HSPs)
scaffold0164 (366-435)||(25938-26007)
[»] chr4 (7 HSPs)
chr4 (366-435)||(18255214-18255283)
chr4 (366-438)||(13989234-13989306)
chr4 (368-443)||(23166289-23166364)
chr4 (473-556)||(35088429-35088512)
chr4 (469-527)||(10654032-10654090)
chr4 (386-440)||(22644738-22644792)
chr4 (83-164)||(16988237-16988318)
[»] scaffold0014 (1 HSPs)
scaffold0014 (366-438)||(94611-94683)
[»] scaffold1416 (1 HSPs)
scaffold1416 (366-432)||(77-143)
[»] scaffold0015 (1 HSPs)
scaffold0015 (368-435)||(23283-23350)
[»] scaffold0329 (1 HSPs)
scaffold0329 (473-527)||(12298-12352)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 4939195 - 4939504
Alignment:
Q  10 atcatcatgtaacttcacagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctgg 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4939195 atcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagacttgaatcagccaaaagatccaaacaatattttctctgg 4939294  T
Q  110 caatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4939295 caatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaaggaagcatgcaagatagact 4939394  T
Q  210 tgacattagtaaactcatacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagag 309  Q
    ||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4939395 tgacattcgtaaactcatacatagagttaccagcaaggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagag 4939494  T
Q  310 agagtaatct 319  Q
    ||||| ||||    
T  4939495 agagtgatct 4939504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 5024285 - 5024594
Alignment:
Q  10 atcatcatgtaacttcacagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctgg 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5024285 atcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagacttgaatcagccaaaagatccaaacaatattttctctgg 5024384  T
Q  110 caatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5024385 caatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaaggaagcatgcaagatagact 5024484  T
Q  210 tgacattagtaaactcatacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagag 309  Q
    ||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5024485 tgacattcgtaaactcatacatagagttaccagcaaggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagag 5024584  T
Q  310 agagtaatct 319  Q
    ||||| ||||    
T  5024585 agagtgatct 5024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 334 - 555
Target Start/End: Original strand, 4941673 - 4941894
Alignment:
Q  334 atagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 433  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941673 atagccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 4941772  T
Q  434 ggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaacc 533  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4941773 ggtttagaatctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaagaaatgcattgtttacatcaagttgatgtataaacc 4941872  T
Q  534 aatggtgaatagatgccaaagc 555  Q
    ||||||||||||||||||||||    
T  4941873 aatggtgaatagatgccaaagc 4941894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 334 - 555
Target Start/End: Original strand, 5026753 - 5026974
Alignment:
Q  334 atagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 433  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5026753 atagccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 5026852  T
Q  434 ggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaacc 533  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5026853 ggtttagaatctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaagaaatgcattgtttacatcaagttgatgtataaacc 5026952  T
Q  534 aatggtgaatagatgccaaagc 555  Q
    ||||||||||||||||||||||    
T  5026953 aatggtgaatagatgccaaagc 5026974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 317 - 555
Target Start/End: Complemental strand, 16157955 - 16157717
Alignment:
Q  317 tctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatca 416  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  16157955 tctgaatttgcatgcttatatccttgagccagtaataaagcagcgagcctttcataccattttctactggcctgctttaaaccatagagagattttacca 16157856  T
Q  417 atttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatc 516  Q
    |||| |||||| |||||||||||||||||| ||||  |  |||||| |||| ||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  16157855 atttacaaactcgattaggtttagaagcttcaattattcgaggtaactgcatgtaaacattctctcgcagttcaccatgaaggaatgcattgtttacatc 16157756  T
Q  517 aagttgatgtataaaccaatggtgaatagatgccaaagc 555  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  16157755 aagttgatggataaaccaatggtgaatagatgccaaagc 16157717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 549
Target Start/End: Complemental strand, 23682047 - 23681887
Alignment:
Q  389 tgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaatt 488  Q
    |||||||| |||||||| |||||||||| |||||| || ||||| |||||| | | ||| |  ||||  || | ||||| ||||||||  ||||| || |    
T  23682047 tgctttaatccatagagggatttaatcagtttgcatacatgatttggtttaaaggatttgacacctggtgggagttgcatgtacacattttcttgtaact 23681948  T
Q  489 caccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgc 549  Q
    | |||||||| || ||||| || ||||||||||| || ||||||||||| |||||||||||    
T  23681947 ccccatgaagaaaagcattattgacatcaagttggtgaataaaccaatgatgaatagatgc 23681887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 28018683 - 28018617
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||   ||||||||||||||||||    
T  28018683 tttcataccattttctactagcctgcttgaggccatagagagatttggacaatttgcaaacttgatt 28018617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 20482504 - 20482570
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  20482504 tttcataccattttctactagcatgcttgaggccatagagagatttggacaatttgcaaacttgatt 20482570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 21807636 - 21807717
Alignment:
Q  83 aaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatatttta 164  Q
    |||||||| | |||||| ||||| || ||| ||||||| || |||  ||||||||| ||||||||||||||||| |||||||    
T  21807636 aaaagatcaagacaatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtatttta 21807717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 23682311 - 23682248
Alignment:
Q  119 ataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttga 182  Q
    ||||| |||| ||||||||| |||||||||||||| |||||||||| |||  | ||||||||||    
T  23682311 ataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 18498780 - 18498834
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| |||||||| || |||||||| |||||||| || ||||||||||||||||    
T  18498780 acatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgta 18498834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 26360451 - 26360505
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| |||||||| || |||||||| |||||||| || ||||||||||||||||    
T  26360451 acatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgta 26360505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 289 - 555
Target Start/End: Original strand, 18551355 - 18551621
Alignment:
Q  289 agatgaggacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcc 388  Q
    ||||||||| || ||||||||||| | |||||||||| | |||||  | ||||||||||  | ||| |   ||||| | |||| ||| ||||| || ||     
T  18551355 agatgaggattttgtgaagagagaatgatctgaattttcttgcttgaaaccttgagccataagtaatgaggtgagcatctcatgccactttctgctagct 18551454  T
Q  389 tgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaatt 488  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||| ||||| || | |||||  |||| ||| | ||||| ||||||||  ||||||||||    
T  18551455 tgctttaatccatagagagatttaatcagtttacaaacttgatttggtttggatgatttaacacctggaggaagttgcatgtacacattttcttgcaatt 18551554  T
Q  489 caccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagc 555  Q
    ||||||||||||| ||||| || |||||||||||||| |||||||||| ||||||||||||||||||    
T  18551555 caccatgaaggaaagcattattgacatcaagttgatgaataaaccaattgtgaatagatgccaaagc 18551621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 15194416 - 15194347
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||||    
T  15194416 tttcataccattttctactggcctgcttcaaaccatatagagatttcaacaacttgcaaacttgattagg 15194347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 15886233 - 15886304
Alignment:
Q  368 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttta 439  Q
    |||||||| |||||||||||||||||||||||||| |  || |||| || ||| ||||||||||| ||||||    
T  15886233 tcataccactttctactggcctgctttaaaccatataatgacttaagcagtttacaaacttgattgggttta 15886304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 527
Target Start/End: Complemental strand, 613344 - 613286
Alignment:
Q  469 gtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||||||| || || | ||||||||||||||| ||||| |||||||||||||||||||    
T  613344 gtacacatcttcctgaagttcaccatgaaggaaggcattatttacatcaagttgatgta 613286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 527
Target Start/End: Complemental strand, 619738 - 619680
Alignment:
Q  469 gtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||||||| || || | ||||||||||||||| ||||| |||||||||||||||||||    
T  619738 gtacacatcttcctgaagttcaccatgaaggaaggcattatttacatcaagttgatgta 619680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 516
Target Start/End: Original strand, 15886338 - 15886381
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatc 516  Q
    |||||||||||||||||||||||||| || |||||||| |||||    
T  15886338 acatcctcttgcaattcaccatgaagaaaggcattgttaacatc 15886381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 25574808 - 25574862
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| |||||||| || |||||||| |||||||| || ||||||||||||||||    
T  25574808 acatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgta 25574862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 44230460 - 44230396
Alignment:
Q  368 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    ||||||||||||||||| || || || |||||||| | |||||||| || |||||| ||||||||    
T  44230460 tcataccattttctacttgcttgtttgaaaccatacaaagatttaagcagtttgcagacttgatt 44230396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 248 - 555
Target Start/End: Complemental strand, 26215092 - 26214785
Alignment:
Q  248 ataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagcca 347  Q
    |||||||||||||| || ||||||| ||||||||| | |  || ||| || ||||| ||||| || | |||||| || |||||||| || ||||||||||    
T  26215092 ataatatcatctacataaaccaaaaggatagtgaatgcagtagctgatgatttggtaaagagtgaatgatctgagttagcatgcttgtaaccttgagcca 26214993  T
Q  348 gtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagcttt 447  Q
    |||| ||||   |||||||||||||||||||||||  ||| ||||| || |||||||| ||||| | |||||| |||||||||||||||||||| |   |    
T  26214992 gtaacaaagaggtgagcctttcataccattttctagaggcttgcttcaatccatagagggattttaccaatttacaaacttgattaggtttagatgtagt 26214893  T
Q  448 aattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagat 547  Q
     || || |  ||||| |||| ||| | ||  ||||||||||||||||| || || |||||||| ||||||||||| ||||| || ||||| ||||| |||    
T  26214892 gataccaggtggtaactgcatgtagaaattttcttgcaattcaccatgcagaaaagcattgttaacatcaagttggtgtatgaatcaatgatgaattgat 26214793  T
Q  548 gccaaagc 555  Q
    || |||||    
T  26214792 gctaaagc 26214785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 296 - 555
Target Start/End: Complemental strand, 6532205 - 6531943
Alignment:
Q  296 gacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgcttta 395  Q
    ||||| ||||| ||||| | |||||| || |||||||| ||||||||| ||||||||||||   | | | |||||||||||||||||  ||| || || |    
T  6532205 gactttgtgaaaagagaatgatctgagttggcatgcttgtagccttgaaccagtaataaagatgttaacttttcataccattttctagaggcttgtttca 6532106  T
Q  396 aaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaatt----cctgaaggtaattgcacgtacacatcctcttgcaattcac 491  Q
    | |||||||| ||||||| ||||||||||||||| |||||||||||    |  |||    || |  |||||||||| ||||||||| |||||||||||||    
T  6532105 atccatagagggatttaaccaatttgcaaacttg-ttaggtttagattgatacattgagaccaggtggtaattgcatgtacacatcttcttgcaattcac 6532007  T
Q  492 catgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagc 555  Q
    |||| ||||| ||||| || ||||||||||| ||||| ||||| || ||||||||||| |||||    
T  6532006 catgcaggaaagcattattaacatcaagttggtgtatgaaccagtgatgaatagatgctaaagc 6531943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 299 - 555
Target Start/End: Original strand, 9802608 - 9802861
Alignment:
Q  299 ttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaac 398  Q
    |||||||| ||||||| || ||||||||| |||||  | ||||||||||  | ||| | | ||||| | |||||||| ||||| || || |||||||| |    
T  9802608 ttggtgaatagagagtgatatgaatttgcttgcttgaaaccttgagccacaagtaatgaagtgagcttctcataccactttctgctagcttgctttaatc 9802707  T
Q  399 catagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaattcaccatgaag 498  Q
    |||||||||||||||||| ||||||||||||||| ||||| || | |||||  |||| ||| | || || ||||||||  |||||||| || ||||||||    
T  9802708 catagagagatttaatcagtttgcaaacttgatttggtttggatgttttaacacctggaggaagttacatgtacacattttcttgcaagtcgccatgaag 9802807  T
Q  499 gaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagc 555  Q
     || ||||| || ||||    |||||| ||||||||||||||||| |||||||||||    
T  9802808 aaaagcattattgacat---attgatggataaaccaatggtgaatggatgccaaagc 9802861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 549
Target Start/End: Original strand, 37737698 - 37737858
Alignment:
Q  389 tgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaatt 488  Q
    |||||||| |||||||| |||||||||| |||||| || ||||| |||||||| | ||| |  ||||  || | ||||| ||||||||  ||||| || |    
T  37737698 tgctttaatccatagagggatttaatcagtttgcatacctgatttggtttagaggatttgacacctggtgggagttgcatgtacacattttcttgtaact 37737797  T
Q  489 caccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgc 549  Q
    | |||||||| || ||||| || ||||||||||| || ||||||||||| |||||||||||    
T  37737798 ccccatgaagaaaagcattattgacatcaagttggtgaataaaccaatgatgaatagatgc 37737858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 49639865 - 49639934
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  49639865 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 49639934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 37737425 - 37737498
Alignment:
Q  116 gagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaa 189  Q
    ||||| || |||| ||||||||| |||||||||||||| |||||||||| |||  | |||||||||||||||||    
T  37737425 gagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaa 37737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 9802434 - 9802501
Alignment:
Q  125 tgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaagga 192  Q
    |||| |||| |||| || ||||||||||| |||||||||| |||  | ||||||||||||||||||||    
T  9802434 tgttcagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaagga 9802501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 52779023 - 52778969
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| ||||| || || |||||||| || |||||||||||||||||||||||||    
T  52779023 acatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgta 52778969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 555
Target Start/End: Original strand, 19813566 - 19813755
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattg 465  Q
    |||||||||| ||||| || || ||||| || |||||||||||||| || | ||| ||||||||||| ||||| || | |||||  |||| ||| | |||    
T  19813566 tttcataccactttctgctagcttgcttcaatccatagagagattttattagtttacaaacttgatttggtttggaggttttaacacctggaggaagttg 19813665  T
Q  466 cacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagc 555  Q
    ||  ||||||| |||||||||||||||||||||||| ||||| || ||||||||||| || || |||||||| | ||| || ||||||||    
T  19813666 catatacacattctcttgcaattcaccatgaaggaaagcattattgacatcaagttggtgaatgaaccaatgattaatggaggccaaagc 19813755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 549
Target Start/End: Complemental strand, 3004724 - 3004564
Alignment:
Q  389 tgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattgcacgtacacatcctcttgcaatt 488  Q
    |||||||| |||||||| |||||||||| |||||| || ||||| |||||||| | ||| |  ||||  || | ||||| ||||||||  ||||| || |    
T  3004724 tgctttaatccatagagggatttaatcagtttgcatacctgatttggtttagaggatttgacacctggtgggagttgcatgtacacattttcttgtaact 3004625  T
Q  489 caccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgc 549  Q
    | |||||||| || ||||| || ||||||||||| || ||||||||||| |||||||||||    
T  3004624 ccccatgaagaaaagcattattgacatcaagttggtgaataaaccaatgatgaatagatgc 3004564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 3004997 - 3004924
Alignment:
Q  116 gagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaa 189  Q
    ||||| || |||| ||||||||| |||||||||||||| |||||||||| |||  | |||||||||||||||||    
T  3004997 gagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaa 3004924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 16257846 - 16257774
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  16257846 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 16257774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 20137806 - 20137740
Alignment:
Q  470 tacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaat 536  Q
    |||||||| ||||||||||| ||||| | ||||||||| |  |||||||||||||||||||| ||||    
T  20137806 tacacatcttcttgcaattctccatgtaagaatgcattatcgacatcaagttgatgtataaatcaat 20137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 23374177 - 23374289
Alignment:
Q  326 gcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaa 425  Q
    |||||||| || ||||||||||| |||||||   |||||||||||||||||||||||  ||| |||||||| |||||||| ||||||| |||||| ||||    
T  23374177 gcatgcttgtaaccttgagccagcaataaagaggtgagcctttcataccattttctagaggcttgctttaatccatagagggatttaaccaatttacaaa 23374276  T
Q  426 cttgattaggttt 438  Q
    || ||||||||||    
T  23374277 ctagattaggttt 23374289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 53979434 - 53979365
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  53979434 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 53979365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 31193957 - 31194029
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  31193957 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 31194029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 52774356 - 52774284
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  52774356 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 52774284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 19585648 - 19585702
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||    
T  19585648 acatcttcttgtaaatctccatgaaggaaagcattgtttacatcaagttgatgta 19585702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 44667447 - 44667499
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatg 525  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| | ||||||    
T  44667447 acatcctcttgcaattctccatgaaggaaagcatttttaacatctaattgatg 44667499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 441
Target Start/End: Complemental strand, 31273841 - 31273428
Alignment:
Q  26 acagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccct 125  Q
    ||||| || |||||||| |||||||||||||| || | ||| |||| ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| |    
T  31273841 acagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaagatctagacaatattttctctgacaaagtgagatacctt 31273742  T
Q  126 gttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagacttgacattagtaaactc 225  Q
    |||  || ||||| || |  ||||| ||||| || || |||||| ||| |||||| |||||||| |||||| ||| ||  || ||||  ||  |||||||    
T  31273741 gtttggagtgagcaacttgcaaacccagaaagtacttgagttgtcctaaatctttaattttgaaagaagcacgcaggacggatttgatgttgttaaactc 31273642  T
Q  226 atacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatctgaattt 325  Q
    | | ||  | || |  | |   |||||||||||||| || ||||||||||| ||||| |||  || ||| || ||||| || || || | || ||| ||     
T  31273641 aga-atgaatttcctgctaaa-ataatatcatctacatagaccaaaatgatggtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagtta 31273544  T
Q  326 gcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaa 425  Q
    |||||||| || |||||||||| ||| ||||   ||||||||||||||||||||||   |||  |||| || |||||||| ||||||| |||||  ||||    
T  31273543 gcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctggaggctcgcttcaatccatagagggatttaaccaattatcaaa 31273444  T
Q  426 cttgattaggtttaga 441  Q
    ||||||| ||||||||    
T  31273443 cttgattgggtttaga 31273428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 6343654 - 6343588
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||   ||||||||||||||||||    
T  6343654 tttcataccattttctactagcctgcttgaggccatagagagatttggacaatttgcaaacttgatt 6343588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 26134768 - 26134696
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  26134768 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 26134696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 6568525 - 6568559
Alignment:
Q  368 tcataccattttctactggcctgctttaaaccata 402  Q
    ||||||||||||||||||||||||||||| |||||    
T  6568525 tcataccattttctactggcctgctttaatccata 6568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 28561373 - 28561296
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaag 443  Q
    |||||||||| ||||| || || ||||||   ||||| |||||||| || | ||||||||||||||||||||| ||||    
T  28561373 tttcataccactttctgctagcttgctttggtccataaagagatttcatgagtttgcaaacttgattaggtttggaag 28561296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 366 - 556
Target Start/End: Original strand, 23884346 - 23884536
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattg 465  Q
    |||||||||| || || || || |||||||| |||||||| |||||||||| |||||| || ||||| |||||||| | ||| |  ||||  || | ||     
T  23884346 tttcataccacttcctgcttgcttgctttaatccatagagggatttaatcagtttgcagacctgatttggtttagaggatttgacgcctggtggaagttt 23884445  T
Q  466 cacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagct 556  Q
    || ||||||||  ||||| || ||||||||||| |||||||| || ||||||| ||| || || |||||||| ||||||||||||||||||    
T  23884446 catgtacacattttcttgtaactcaccatgaagaaatgcattattgacatcaatttggtgaatgaaccaatgatgaatagatgccaaagct 23884536  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 474 - 554
Target Start/End: Original strand, 31327663 - 31327743
Alignment:
Q  474 catcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaag 554  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||    
T  31327663 catcttcttgcaattctccatgaagaaatgcattgtttacatcaagttgatgcatatgccaatgatgaatagatgctaaag 31327743  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 474 - 554
Target Start/End: Original strand, 31376330 - 31376410
Alignment:
Q  474 catcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaag 554  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||    
T  31376330 catcttcttgcaattctccatgaagaaatgcattgtttacatcaagttgatgcatatgccaatgatgaatagatgctaaag 31376410  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 23884047 - 23884169
Alignment:
Q  67 aagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagt 166  Q
    ||||| ||||||||| |  | |||||||||||| ||||| |||||  | ||||| || |||| ||||||||| |||||||||||||| |||||||||| |    
T  23884047 aagacctgaatcagcaagcaaatccaaacaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaat 23884146  T
Q  167 tgttctagatctttgattttgaa 189  Q
    ||  | |||||||||||||||||    
T  23884147 tggccaagatctttgattttgaa 23884169  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 366 - 549
Target Start/End: Original strand, 36731534 - 36731717
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaagctttaattcctgaaggtaattg 465  Q
    |||||||||||||||| || || ||||| || |||||||| |||||||||| |||||| || ||||| |||||||  | ||| |  | ||  || | |||    
T  36731534 tttcataccattttctgctagcttgcttcaatccatagagggatttaatcagtttgcatacctgatttggtttagcggatttgacacttggtgggagttg 36731633  T
Q  466 cacgtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgc 549  Q
    || ||||||||  ||||| || ||  ||||||| || ||||| || ||||||||||| || ||||||||||| |||||||||||    
T  36731634 caagtacacattttcttgtaactccacatgaagaaaagcattattgacatcaagttggtgaataaaccaatgatgaatagatgc 36731717  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 15450037 - 15449983
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    |||||||||||||  |||||||||||||| |||||||| ||||||||||||||||    
T  15450037 acatcctcttgcagatcaccatgaaggaaagcattgttcacatcaagttgatgta 15449983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 16989669 - 16989735
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    |||||||||||| |||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  16989669 tttcataccattgtctactagcttgcttgaggccatagagagatttggacaatttgcaaacttgatt 16989735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 20322631 - 20322732
Alignment:
Q  88 atccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttg 187  Q
    |||||| ||||||||  |||| ||| ||||||||||  ||||||||||||| || || |  ||||| ||  |||||| |||| ||| |||||||||||||    
T  20322631 atccaagcaatatttcttctgacaaagagagataccaagttgagaatgagcaacttcaagtccaaggaagaattttaattgtcctaaatctttgattttg 20322730  T
Q  188 aa 189  Q
    ||    
T  20322731 aa 20322732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 26465351 - 26465419
Alignment:
Q  94 acaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattt 162  Q
    |||||||||||| |||||| ||||||| || |||   |||||||| || |||||||||||||| |||||    
T  26465351 acaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagtattt 26465419  T

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Target: scaffold0164 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 25938 - 26007
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  25938 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 26007  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 18255283 - 18255214
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    |||||||||||||||||||||||||||| |||||||| | ||| || | ||| |||||||||||||||||    
T  18255283 tttcataccattttctactggcctgcttcaaaccatatatagacttcaacaacttgcaaacttgattagg 18255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 13989306 - 13989234
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  13989306 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 13989234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 23166289 - 23166364
Alignment:
Q  368 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaag 443  Q
    |||||||| ||||||||||| || ||||||||||| ||||||||| | || ||||| ||||||||  |||||||||    
T  23166289 tcataccactttctactggcttgttttaaaccataaagagatttagttaacttgcagacttgattgagtttagaag 23166364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 556
Target Start/End: Complemental strand, 35088512 - 35088429
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgtataaaccaatggtgaatagatgccaaagct 556  Q
    ||||||||||| || |||||||| || ||||||||||| |||||||||||||| || ||||| | || ||| ||||| ||||||    
T  35088512 acatcctcttgtaaatcaccatgcagaaatgcattgttgacatcaagttgatgaatgaaccagttgttaattgatgctaaagct 35088429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 527
Target Start/End: Complemental strand, 10654090 - 10654032
Alignment:
Q  469 gtacacatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||||||| || || | |||||||||||| || ||||| |||||||||||||||||||    
T  10654090 gtacacatcttcctgaagttcaccatgaagaaaggcattatttacatcaagttgatgta 10654032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 22644792 - 22644738
Alignment:
Q  386 gcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttag 440  Q
    |||||||| |||||||| || |||||  |||||||||||||||||| ||||||||    
T  22644792 gcctgcttcaaaccataaagggatttcttcaatttgcaaacttgatgaggtttag 22644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 16988318 - 16988237
Alignment:
Q  83 aaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatatttta 164  Q
    |||||||| | |||||| ||||| || ||| ||||||| || |||   |||||||| ||||||||||||||||| |||||||    
T  16988318 aaaagatcaagacaatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtatttta 16988237  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 94611 - 94683
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 438  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  94611 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 94683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 77 - 143
Alignment:
Q  366 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 432  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  77 tttcataccattttctactagcatgcttgaggccatagagagatttggacaatttgcaaacttgatt 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 23350 - 23283
Alignment:
Q  368 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 435  Q
    ||||||||||||||||| ||||| || || ||||| || |||||  |||||||||| |||||||||||    
T  23350 tcataccattttctactagcctgtttcaatccataaagtgatttgttcaatttgcagacttgattagg 23283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 12352 - 12298
Alignment:
Q  473 acatcctcttgcaattcaccatgaaggaatgcattgtttacatcaagttgatgta 527  Q
    ||||| ||||| || || |||||||| || |||||||||||||||||||||||||    
T  12352 acatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgta 12298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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