View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6581_low_31 (Length: 214)
Name: NF6581_low_31
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6581_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 19106132 - 19105975
Alignment:
| Q |
54 |
ctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaacaaaattatcatctataaaatgg |
153 |
Q |
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| T |
19106132 |
ctgccactcaaatattaaacatctaa-ttggagtttagtattgacaatatcagatataggttatatcttctatgtaacaaaattatcatctataaaatgg |
19106034 |
T |
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| Q |
154 |
agaaagaaacctaacactattcaacttcctgtgtaacttctaagttcctaattgttcct |
212 |
Q |
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| T |
19106033 |
agaaagaaacctaacactattcaacttcatgtgtaacttcgaacttcctaattgttcct |
19105975 |
T |
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Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 2350059 - 2349897
Alignment:
| Q |
54 |
ctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctat----gtaacaaaattatcatctataaa |
149 |
Q |
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| T |
2350059 |
ctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatatatgtaacaaaattatcatctataaa |
2349960 |
T |
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| Q |
150 |
atggagaaagaaacctaacactattcaacttcctgtgtaacttctaagttcctaattgttcct |
212 |
Q |
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| T |
2349959 |
atggagaaagaaacctaacacaattaaacttccagtgtaacttcgaagctcctaattgttcct |
2349897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 20922497 - 20922668
Alignment:
| Q |
54 |
ctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaacaaaattatcatct--------- |
144 |
Q |
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| T |
20922497 |
ctgccactcaaatattaaacatcgaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaacaaaattatcatctataaaatga |
20922596 |
T |
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| Q |
145 |
----ataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttctaagttcctaattgttcct |
212 |
Q |
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| T |
20922597 |
atcgataaaatggagaaagaaacctaacactattcaacttcctgtgtaacttcgaagttcctaattgttcct |
20922668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 32594418 - 32594247
Alignment:
| Q |
54 |
ctgccactcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaacaaaattatcatctataa----- |
148 |
Q |
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| T |
32594418 |
ctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttctatgtaacaaaattatcatctataaaatga |
32594319 |
T |
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| Q |
149 |
--------aatggagaaagaaacctaacactattcaacttcctgtgtaacttctaagttcctaattgttcct |
212 |
Q |
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| T |
32594318 |
atcgataaaatggagaaagaaacctaacacaattcaacttcctgtgtaacttcgaagctcctaattgttcct |
32594247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 32774948 - 32774900
Alignment:
| Q |
68 |
ttaaacatctaaattggagtttagtattgacaatatcagatataggttc |
116 |
Q |
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| T |
32774948 |
ttaaacatccaaattggagtttattattgacaatatcagatataggttc |
32774900 |
T |
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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47280469 - 47280527
Alignment:
| Q |
1 |
ccttgtaatattttcaacattcagcaaattaaaaatctttttgggtaccgcctctgcca |
59 |
Q |
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| T |
47280469 |
ccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgcca |
47280527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47274687 - 47274745
Alignment:
| Q |
1 |
ccttgtaatattttcaacattcagcaaattaaaaatctttttgggtaccgcctctgcca |
59 |
Q |
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| T |
47274687 |
ccttgtaatattttcaacattcatcaaaccaagaatcttttcaggtacagcctctgcca |
47274745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 49060341 - 49060397
Alignment:
| Q |
1 |
ccttgtaatattttcaacattcagcaaattaaaaatctttttgggtaccgcctctgc |
57 |
Q |
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| T |
49060341 |
ccttgtaatattttcgacattcatcatatcaagaatttttttgggtacagcctctgc |
49060397 |
T |
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