View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_low_34 (Length: 206)

Name: NF6581_low_34
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_low_34
NF6581_low_34
[»] chr8 (3 HSPs)
chr8 (1-69)||(12571674-12571742)
chr8 (65-142)||(12571785-12571862)
chr8 (133-196)||(12572396-12572457)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12571674 - 12571742
Alignment:
Q  1 tacttccagaatcctatgtatattttacgaaacatgtggattggtaatgttgttcgctaatgatttctc 69  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12571674 tacttccagaatcctgtgtatattttacgaaacatgtggattggtaatgttgttcgctaatgatttctc 12571742  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 12571785 - 12571862
Alignment:
Q  65 ttctcgaacaaaaatgctccgattttactgcggtgtagccctcgaaaagcnnnnnnntaggtctttcacataaattta 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||    
T  12571785 ttctcgaacaaaaatgctccgattttactgcggtgtagccctcgaaaaacaaaaaaataggtctttcacataaattta 12571862  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 12572396 - 12572457
Alignment:
Q  133 cataaatttatctgtggttgattgaaattcatttggaccatgctaactctaataa-ctccctatg 196  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||    
T  12572396 cataaatttatctgt---tgattgaaattcatttggaccatgctaactctaataatctccctatg 12572457  T

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