View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6581_low_8 (Length: 419)

Name: NF6581_low_8
Description: NF6581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6581_low_8
NF6581_low_8
[»] chr3 (7 HSPs)
chr3 (1-244)||(31762031-31762274)
chr3 (245-402)||(31762355-31762512)
chr3 (174-208)||(46434750-46434784)
chr3 (179-208)||(19679463-19679492)
chr3 (171-208)||(19679865-19679902)
chr3 (172-205)||(43951696-43951729)
chr3 (176-208)||(37138242-37138274)
[»] chr1 (10 HSPs)
chr1 (166-208)||(48064179-48064221)
chr1 (175-207)||(35925584-35925616)
chr1 (173-208)||(11218103-11218138)
chr1 (176-209)||(1510099-1510132)
chr1 (176-209)||(34404932-34404965)
chr1 (245-274)||(34536249-34536278)
chr1 (176-208)||(4920908-4920940)
chr1 (176-208)||(34619520-34619552)
chr1 (176-208)||(38219825-38219857)
chr1 (164-208)||(46252840-46252884)
[»] chr4 (7 HSPs)
chr4 (176-209)||(19039661-19039694)
chr4 (176-208)||(54214895-54214927)
chr4 (174-208)||(11155555-11155589)
chr4 (177-207)||(47946110-47946140)
chr4 (176-209)||(2987069-2987102)
chr4 (176-208)||(47399414-47399446)
chr4 (176-208)||(50298411-50298443)
[»] chr8 (8 HSPs)
chr8 (176-208)||(31751714-31751746)
chr8 (168-208)||(44426545-44426585)
chr8 (174-208)||(6526382-6526416)
chr8 (174-208)||(8499085-8499119)
chr8 (174-208)||(31118866-31118900)
chr8 (244-276)||(21130702-21130734)
chr8 (168-208)||(31891791-31891831)
chr8 (176-208)||(37353406-37353438)
[»] chr7 (4 HSPs)
chr7 (168-208)||(46945767-46945807)
chr7 (178-208)||(32156891-32156921)
chr7 (176-208)||(25595986-25596018)
chr7 (176-208)||(31002960-31002992)
[»] chr5 (11 HSPs)
chr5 (176-208)||(5559610-5559642)
chr5 (176-207)||(11715018-11715049)
chr5 (168-209)||(1942943-1942984)
chr5 (163-204)||(8089666-8089707)
chr5 (176-209)||(12467070-12467103)
chr5 (176-208)||(6593180-6593212)
chr5 (176-208)||(29845055-29845087)
chr5 (176-208)||(30291141-30291173)
chr5 (176-208)||(32927977-32928009)
chr5 (176-208)||(38105021-38105053)
chr5 (176-208)||(42573937-42573969)
[»] chr2 (7 HSPs)
chr2 (171-207)||(39621859-39621895)
chr2 (237-267)||(5045125-5045155)
chr2 (176-208)||(12140446-12140478)
chr2 (176-208)||(28039474-28039506)
chr2 (176-208)||(40158644-40158676)
chr2 (176-208)||(41880660-41880692)
chr2 (168-208)||(42907244-42907284)
[»] chr6 (3 HSPs)
chr6 (178-208)||(769045-769075)
chr6 (237-274)||(8420147-8420186)
chr6 (176-208)||(20368330-20368362)
[»] scaffold0016 (1 HSPs)
scaffold0016 (162-194)||(36849-36881)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31762031 - 31762274
Alignment:
Q  1 tcacccaaaaacactatcagaggaggtcagacagaaccaacaaaaattgtgatagttacatattgcattccaaatataactcaaaagaaactagtcaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31762031 tcacccaaaaacactatcagaggaggtcagacagaaccaacaaaaattgtgatagttacatattgcattccaaatataactcaaaagaaactagtcaagc 31762130  T
Q  101 ttttcaaattctactcaaatttacaaatcccannnnnnnncctttccctctaccacacactatatacttaggtcttgtttggataaacaacttaatttgc 200  Q
    ||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31762131 ttttcaaattctactcaaatttacaaatcccattttttttccttttcctctaccacacactatatacttaggtcttgtttggataaacaacttaatttgc 31762230  T
Q  201 agcttataaaatgaagttaaagtgtcttcgtataaactataagc 244  Q
    |||||||||||| ||||||||||||||||| |||||||||||||    
T  31762231 agcttataaaataaagttaaagtgtcttcgcataaactataagc 31762274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 245 - 402
Target Start/End: Original strand, 31762355 - 31762512
Alignment:
Q  245 tctcaaacagtctcacaagtgtttatgtcagcctataactataatctcaattaaatcaatccaaacagactcgtaaacctgcaccaaagccatgatcaaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31762355 tctcaaacagtctcacaagtgtttatgtcagcctataactataatctcaattaaatcaatccaaacagacccgtaaacctgcaccaaagccatgatcaaa 31762454  T
Q  345 gcagcataaaaccctaacaaatatcccatctaacactaacacatgccaatgaacataa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31762455 gcagcataaaaccctaacaaatatcccatctaacactaacacatgccaatgaacataa 31762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 46434784 - 46434750
Alignment:
Q  174 cttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  46434784 cttgtttggataaacaacttattttgcagcttata 46434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 19679492 - 19679463
Alignment:
Q  179 ttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||||||||||||    
T  19679492 ttggataaacaacttaatttgcagcttata 19679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 19679902 - 19679865
Alignment:
Q  171 ggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  19679902 ggtcttatttggagaaacaacttaatttgcagcttata 19679865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 43951696 - 43951729
Alignment:
Q  172 gtcttgtttggataaacaacttaatttgcagctt 205  Q
    ||||||||||||||||||||||| ||||||||||    
T  43951696 gtcttgtttggataaacaacttactttgcagctt 43951729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 37138242 - 37138274
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||| ||||||||    
T  37138242 tgtttggataaacaacttaatttgaagcttata 37138274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 48064179 - 48064221
Alignment:
Q  166 acttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  48064179 acttaggccatgtttggataaacaacttaatttgcagcttata 48064221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 35925584 - 35925616
Alignment:
Q  175 ttgtttggataaacaacttaatttgcagcttat 207  Q
    |||||||||||||||||||||||||||||||||    
T  35925584 ttgtttggataaacaacttaatttgcagcttat 35925616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 11218138 - 11218103
Alignment:
Q  173 tcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11218138 tcttgtttggataaacaacataatttgcagcttata 11218103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 1510132 - 1510099
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttataa 209  Q
    |||||||||||||||||||||||| |||||||||    
T  1510132 tgtttggataaacaacttaatttgtagcttataa 1510099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 34404932 - 34404965
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttataa 209  Q
    |||||||||||||||||||||||| |||||||||    
T  34404932 tgtttggataaacaacttaatttgaagcttataa 34404965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 34536249 - 34536278
Alignment:
Q  245 tctcaaacagtctcacaagtgtttatgtca 274  Q
    ||||||||||||||||||||||||||||||    
T  34536249 tctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 4920940 - 4920908
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||| ||||||||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttata 4920908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 34619552 - 34619520
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||| ||||||||||||||||||    
T  34619552 tgtttggataaacagcttaatttgcagcttata 34619520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 38219825 - 38219857
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||| ||||||||||||||||||    
T  38219825 tgtttggataaacatcttaatttgcagcttata 38219857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 46252884 - 46252840
Alignment:
Q  164 atacttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||| |||||||||||||| ||| |||||||| |||||||||    
T  46252884 atacttaagtcttgtttggatacacagcttaattttcagcttata 46252840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 19039661 - 19039694
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttataa 209  Q
    ||||||||||||||||||||||||||||||||||    
T  19039661 tgtttggataaacaacttaatttgcagcttataa 19039694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 54214895 - 54214927
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||||||||    
T  54214895 tgtttggataaacaacttaatttgcagcttata 54214927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 11155589 - 11155555
Alignment:
Q  174 cttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  11155589 cttgtttggataaacaacttactttgcagcttata 11155555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 47946110 - 47946140
Alignment:
Q  177 gtttggataaacaacttaatttgcagcttat 207  Q
    |||||||||||||||||||||||||||||||    
T  47946110 gtttggataaacaacttaatttgcagcttat 47946140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 2987069 - 2987102
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttataa 209  Q
    ||||||||||||||| ||||||||||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataa 2987102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 47399414 - 47399446
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||| |||||||||||||    
T  47399414 tgtttggataaacaacttagtttgcagcttata 47399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 50298411 - 50298443
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||| ||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttata 50298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 31751746 - 31751714
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||||||||    
T  31751746 tgtttggataaacaacttaatttgcagcttata 31751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 44426585 - 44426545
Alignment:
Q  168 ttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  44426585 ttaggtcatgtttgggtaaacaacttaatttgcagcttata 44426545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 6526416 - 6526382
Alignment:
Q  174 cttgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||| ||||||||||||||||||    
T  6526416 cttgtttggataaacagcttaatttgcagcttata 6526382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 8499085 - 8499119
Alignment:
Q  174 cttgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||| ||||||    
T  8499085 cttgtttggataaacaacttaatttgcaacttata 8499119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 31118900 - 31118866
Alignment:
Q  174 cttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||||| |||||||||||    
T  31118900 cttgtttggataaacaacttaatgtgcagcttata 31118866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 21130702 - 21130734
Alignment:
Q  244 ctctcaaacagtctcacaagtgtttatgtcagc 276  Q
    ||||||||||||||||||||| |||||||||||    
T  21130702 ctctcaaacagtctcacaagtatttatgtcagc 21130734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 31891791 - 31891831
Alignment:
Q  168 ttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||| | ||||||||||||||||||||||||| |||||    
T  31891791 ttaggtcctatttggataaacaacttaatttgcagtttata 31891831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 37353438 - 37353406
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||| ||||||||||||||    
T  37353438 tgtttggataaacaacttgatttgcagcttata 37353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 46945767 - 46945807
Alignment:
Q  168 ttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  46945767 ttaggccttgtttggataaacaacttagtttgcagcttata 46945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 32156891 - 32156921
Alignment:
Q  178 tttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||||||    
T  32156891 tttggataaacaacttaatttgcagcttata 32156921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 25595986 - 25596018
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||| ||||||||||||    
T  25595986 tgtttggataaacaacttaacttgcagcttata 25596018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 31002992 - 31002960
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||| ||||||    
T  31002992 tgtttggataaacaacttaatttgcatcttata 31002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 5559610 - 5559642
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttata 5559642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 11715049 - 11715018
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttat 207  Q
    ||||||||||||||||||||||||||||||||    
T  11715049 tgtttggataaacaacttaatttgcagcttat 11715018  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 1942943 - 1942984
Alignment:
Q  168 ttaggtcttgtttggataaacaacttaatttgcagcttataa 209  Q
    ||||||| |||||||||||||| || ||||||||||||||||    
T  1942943 ttaggtcctgtttggataaacatctaaatttgcagcttataa 1942984  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 8089666 - 8089707
Alignment:
Q  163 tatacttaggtcttgtttggataaacaacttaatttgcagct 204  Q
    |||||||||| | |||||||||||||||||||||||| ||||    
T  8089666 tatacttaggccatgtttggataaacaacttaatttgtagct 8089707  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 12467070 - 12467103
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttataa 209  Q
    ||||||||||||||| ||||||||||||||||||    
T  12467070 tgtttggataaacaatttaatttgcagcttataa 12467103  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 6593180 - 6593212
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||||| |||||||||    
T  6593180 tgtttggataaacaacttaatttacagcttata 6593212  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 29845087 - 29845055
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||| ||||||    
T  29845087 tgtttggataaacaacttaatttgcaacttata 29845055  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 30291141 - 30291173
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||| |||||||||||||||||||||    
T  30291141 tgtttggataaccaacttaatttgcagcttata 30291173  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 32927977 - 32928009
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||| ||||||||||||||||||||||||||    
T  32927977 tgtttgaataaacaacttaatttgcagcttata 32928009  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 38105053 - 38105021
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||| |||||||||||||    
T  38105053 tgtttggataaacaacttattttgcagcttata 38105021  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 42573969 - 42573937
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||| ||||||||||||||||||    
T  42573969 tgtttggataaacagcttaatttgcagcttata 42573937  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 39621859 - 39621895
Alignment:
Q  171 ggtcttgtttggataaacaacttaatttgcagcttat 207  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39621859 ggtcttgtttggataaacaacttattttgcagcttat 39621895  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 5045155 - 5045125
Alignment:
Q  237 ctataagctctcaaacagtctcacaagtgtt 267  Q
    |||||||||||||||||||||||||||||||    
T  5045155 ctataagctctcaaacagtctcacaagtgtt 5045125  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 12140446 - 12140478
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||| |||||||||||||    
T  12140446 tgtttggataaacaacttattttgcagcttata 12140478  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 28039506 - 28039474
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||||||||||| |||||    
T  28039506 tgtttggataaacaacttaatttgcagtttata 28039474  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 40158644 - 40158676
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||| ||||||||    
T  40158644 tgtttggataaacaacttaatttgtagcttata 40158676  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 41880692 - 41880660
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    ||||||||||||||||||| |||||||||||||    
T  41880692 tgtttggataaacaacttactttgcagcttata 41880660  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 42907244 - 42907284
Alignment:
Q  168 ttaggtcttgtttggataaacaacttaatttgcagcttata 208  Q
    ||||| |||| ||||||||||| ||||||||||||||||||    
T  42907244 ttaggacttgattggataaacagcttaatttgcagcttata 42907284  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 769045 - 769075
Alignment:
Q  178 tttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||||||||||||    
T  769045 tttggataaacaacttaatttgcagcttata 769075  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 8420186 - 8420147
Alignment:
Q  237 ctataagctctca--aacagtctcacaagtgtttatgtca 274  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  8420186 ctataagctctcactaacagtctcacaagtgtttatgtca 8420147  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 20368362 - 20368330
Alignment:
Q  176 tgtttggataaacaacttaatttgcagcttata 208  Q
    |||||||||||||||||||||| ||||||||||    
T  20368362 tgtttggataaacaacttaattggcagcttata 20368330  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 36849 - 36881
Alignment:
Q  162 atatacttaggtcttgtttggataaacaactta 194  Q
    ||||||||| |||||||||||||||||||||||    
T  36849 atatacttaagtcttgtttggataaacaactta 36881  T

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