View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6582_high_2 (Length: 644)

Name: NF6582_high_2
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6582_high_2
NF6582_high_2
[»] chr3 (10 HSPs)
chr3 (19-243)||(3080010-3080234)
chr3 (19-231)||(4549198-4549410)
chr3 (19-234)||(3093886-3094101)
chr3 (550-636)||(3080232-3080318)
chr3 (87-196)||(3133836-3133945)
chr3 (93-230)||(3101579-3101716)
chr3 (87-209)||(3120947-3121069)
chr3 (347-413)||(42091795-42091861)
chr3 (374-452)||(20519429-20519507)
chr3 (356-444)||(54437651-54437739)
[»] chr8 (15 HSPs)
chr8 (26-234)||(15697845-15698053)
chr8 (66-234)||(15805837-15806005)
chr8 (62-237)||(15712267-15712442)
chr8 (71-220)||(15722886-15723035)
chr8 (70-217)||(15800290-15800437)
chr8 (21-217)||(15704249-15704445)
chr8 (48-142)||(15693524-15693618)
chr8 (69-217)||(15813728-15813876)
chr8 (345-444)||(32166608-32166707)
chr8 (402-491)||(32166727-32166816)
chr8 (69-131)||(15792174-15792236)
chr8 (344-508)||(33897571-33897735)
chr8 (362-452)||(37010310-37010400)
chr8 (348-412)||(33897743-33897807)
chr8 (345-421)||(34695832-34695908)
[»] chr7 (7 HSPs)
chr7 (348-507)||(34891371-34891529)
chr7 (348-501)||(3191650-3191803)
chr7 (348-491)||(42012641-42012781)
chr7 (344-450)||(32962358-32962464)
chr7 (345-397)||(31171313-31171365)
chr7 (349-410)||(31152738-31152799)
chr7 (262-326)||(32988604-32988667)
[»] chr4 (8 HSPs)
chr4 (348-500)||(25234284-25234436)
chr4 (72-200)||(36290197-36290325)
chr4 (352-439)||(11020059-11020145)
chr4 (358-413)||(54000220-54000275)
chr4 (261-326)||(25234449-25234513)
chr4 (352-412)||(20512832-20512892)
chr4 (260-320)||(22050624-22050682)
chr4 (377-413)||(22050732-22050768)
[»] chr6 (4 HSPs)
chr6 (348-454)||(23577014-23577120)
chr6 (345-396)||(20206476-20206527)
chr6 (345-396)||(22100499-22100550)
chr6 (345-388)||(32342603-32342646)
[»] chr5 (7 HSPs)
chr5 (348-491)||(7113710-7113854)
chr5 (344-469)||(39730394-39730519)
chr5 (345-450)||(973114-973219)
chr5 (344-422)||(2243311-2243389)
chr5 (374-431)||(5205524-5205581)
chr5 (345-450)||(7215264-7215368)
chr5 (345-450)||(37077763-37077868)
[»] chr2 (7 HSPs)
chr2 (349-469)||(13712867-13712987)
chr2 (345-477)||(16576420-16576552)
chr2 (345-485)||(16576251-16576390)
chr2 (364-450)||(2909844-2909930)
chr2 (348-413)||(35371117-35371182)
chr2 (345-431)||(16863459-16863545)
chr2 (345-410)||(13712757-13712822)
[»] chr1 (9 HSPs)
chr1 (363-509)||(44342107-44342254)
chr1 (345-443)||(68100-68198)
chr1 (345-486)||(35956986-35957125)
chr1 (345-390)||(35660763-35660808)
chr1 (345-388)||(24873768-24873811)
chr1 (345-388)||(24874601-24874644)
chr1 (345-391)||(10775166-10775212)
chr1 (345-405)||(45967838-45967898)
chr1 (344-396)||(52432835-52432887)
[»] scaffold0047 (1 HSPs)
scaffold0047 (344-400)||(62744-62800)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 3080010 - 3080234
Alignment:
Q  19 atttagtagatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaatt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3080010 atttagttgatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaatt 3080109  T
Q  119 gcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcat 218  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3080110 gcaacatagaaaccttgtgagacttttgggttgttgcattgaagataatgaaaagttgcttgtatatgaatacatgccaaactctagccttgactttcat 3080209  T
Q  219 ctatttggtatgttttcacttttaa 243  Q
    |||||||||||||||||||||||||    
T  3080210 ctatttggtatgttttcacttttaa 3080234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4549410 - 4549198
Alignment:
Q  19 atttagtagatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaatt 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||  ||||||||||||||||| ||||||||    
T  4549410 atttagtagatggaacagaagttgcaatcaaaaggctgtctataacatctgatcaaggtttagaagagttcacaaatgaagtaatctttatagctaaatt 4549311  T
Q  119 gcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcat 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  4549310 gcaacataggaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttctatatgaatacatgccaaactctagcctcgacttttat 4549211  T
Q  219 ctatttggtatgt 231  Q
    |||||||||||||    
T  4549210 ctatttggtatgt 4549198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 3093886 - 3094101
Alignment:
Q  19 atttagtagatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || |||||||  ||||||||||||||||| ||||||||    
T  3093886 atttagtagatggaacagaagttgcaatcaaaaggctctctacaacatctggtcaaggtttggaggagttcacaaatgaagtaatctttatagctaaatt 3093985  T
Q  119 gcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcat 218  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3093986 acaacatagaaaccttgtgagacttttgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagccttgactttcat 3094085  T
Q  219 ctatttggtatgtttt 234  Q
    ||||||||||||||||    
T  3094086 ctatttggtatgtttt 3094101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 550 - 636
Target Start/End: Original strand, 3080232 - 3080318
Alignment:
Q  550 taaatacttcaagcacaagtttcccgtgttacttattctatgttgtttgctccatacatttttgtgtcaaatactaacatattcttc 636  Q
    ||||| |||||  ||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  3080232 taaattcttcatccacaagtctcccatgttacttattctatgctgtctgctccatacatttttgtgtcaaatactaacattttcttc 3080318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 3133945 - 3133836
Alignment:
Q  87 ttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatg 186  Q
    ||||||||||| ||||| || ||||| |||||||||||| | |||||||||||||| |||| ||| ||||||||| | ||||| ||| ||||| | ||||    
T  3133945 ttcaagaatgaggtaatgttgattgccaaattgcaacatcggaaccttgtgagactgttggcttgctgcattgagcaaaatgagaagctgcttatctatg 3133846  T
Q  187 aatacatgcc 196  Q
    ||| ||||||    
T  3133845 aatgcatgcc 3133836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 3101579 - 3101716
Alignment:
Q  93 aatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaataca 192  Q
    |||||| |||| || ||||| |||||||| ||| |||||||||| |||||||||| ||| ||||| ||| | ||||||||| | ||| | |||||||||     
T  3101579 aatgaaataatattgattgccaaattgcagcatcgaaaccttgtcagactattggcttgctgcatcgagcaaaatgaaaagcttcttatctatgaatact 3101678  T
Q  193 tgccaaactctagcctcgactttcatctatttggtatg 230  Q
    |||| || || ||||| || || || ||||||||||||    
T  3101679 tgcctaattcaagccttgatttccacctatttggtatg 3101716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 3120947 - 3121069
Alignment:
Q  87 ttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatg 186  Q
    ||||||||||||||||| || || || |||||||| ||| | |||||||||||||| || | ||  ||||||||| | ||||||||| ||||| | ||||    
T  3120947 ttcaagaatgaagtaatgttgatagccaaattgcagcatcggaaccttgtgagactgttagctttctgcattgagcaaaatgaaaagctgcttatctatg 3121046  T
Q  187 aatacatgccaaactctagcctc 209  Q
    | |||||||| || || ||||||    
T  3121047 agtacatgcctaattcaagcctc 3121069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 42091861 - 42091795
Alignment:
Q  347 cttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtg 413  Q
    |||||||| ||||||||||||||| | ||||||||||||||| || || || || ||||||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtg 42091795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 452
Target Start/End: Complemental strand, 20519507 - 20519429
Alignment:
Q  374 aaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgtatttgt 452  Q
    ||||||||||||||| || |||| ||| ||| ||| |||| | | ||||  |||||||||||||||||||| |||||||    
T  20519507 aaaaacatcaaactttttcattttcttcattcaacgtgtgatatccatctttttcgttccaaaattgaatcatatttgt 20519429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 54437651 - 54437739
Alignment:
Q  356 aattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    ||||| ||||||||| | || ||||| ||||||||| || ||||| |||||||||||   || |||| ||||||||||| |||| ||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctctttcgttccagaatttaatc 54437739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 15698053 - 15697845
Alignment:
Q  26 agatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacat 125  Q
    |||||| |||||| ||||| ||||||||||  |   ||| || |||||||||||||| |||||||||||||||||||| || || |||||| |||||||     
T  15698053 agatgggacagaaattgcagtcaaaaggcttgcagaaacgtcgggtcaaggttcagaggagttcaagaatgaagtaattttcatagctaaactgcaacac 15697954  T
Q  126 agaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcatctatttg 225  Q
    |||||||| |||||||| |||||||| |||||||| |  ||||||||| | || ||||||||||||||||| || || ||||| |||||||| || || |    
T  15697953 agaaacctcgtgagactcttgggttgctgcattgaaggaaatgaaaagatactagtatatgaatacatgccgaattcaagccttgactttcaccttttcg 15697854  T
Q  226 gtatgtttt 234  Q
    |||||||||    
T  15697853 gtatgtttt 15697845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 15806005 - 15805837
Alignment:
Q  66 tctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggata 165  Q
    ||||||||||||||||| |||||| | |||||||||||||| || || ||  |||||||  ||||||| |||| ||| ||||| || ||||| ||||| |    
T  15806005 tctggtcaaggttcagaggagttcgaaaatgaagtaatcttcatagccaatctgcaacaccgaaacctcgtgaaactcttgggctgctgcatggaggaaa 15805906  T
Q  166 atgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcatctatttggtatgtttt 234  Q
    |||||||  | ||||||||||||||| ||| ||| || |||||||||||||| || || ||||||||||    
T  15805905 atgaaaaaatacttgtatatgaatacttgcaaaattcaagcctcgactttcaccttttcggtatgtttt 15805837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 15712442 - 15712267
Alignment:
Q  62 aacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgag 161  Q
    |||||| |||||||||| ||| ||||||||||||||||| || || || || ||| | |||||||||||||| |||| ||| |||||||||||| ||||     
T  15712442 aacatcaggtcaaggtttagaggagttcaagaatgaagtgattttcatagcaaaactacaacatagaaacctcgtgaaactcttgggttgttgctttgaa 15712343  T
Q  162 gataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttcatctatttggtatgttttcac 237  Q
     | ||||||||| | || ||||| || ||||||| ||| || |||||||||||||| || ||  ||||||||||||    
T  15712342 caaaatgaaaagatactagtatacgagtacatgcaaaattcaagcctcgactttcaccttttcagtatgttttcac 15712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 15723035 - 15722886
Alignment:
Q  71 tcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaa 170  Q
    |||||||| ||| ||||| |||||||||||||| || || |||||||||||||| || ||||||||||  ||||| ||||| |||||||| || ||||||    
T  15723035 tcaaggtttagaggagtttaagaatgaagtaatattcatagctaaattgcaacacaggaaccttgtgaagctattaggttgctgcattgaagaaaatgaa 15722936  T
Q  171 aagttgcttgtatatgaatacatgccaaactctagcctcgactttcatct 220  Q
    ||| |  | |||||||| ||||||||||| || || || |||||||||||    
T  15722935 aagatattagtatatgagtacatgccaaattcaagtcttgactttcatct 15722886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 15800437 - 15800290
Alignment:
Q  70 gtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatga 169  Q
    ||||||||||||| |||||||||||||||||||| || || |||||| ||||||||||||||||||  | ||| |||||||  ||||||||||   ||||    
T  15800437 gtcaaggttcagaggagttcaagaatgaagtaatattcatagctaaactgcaacatagaaaccttgcaaaactcttgggttactgcattgagggagatga 15800338  T
Q  170 aaagttgcttgtatatgaatacatgccaaactctagcctcgactttca 217  Q
    |||  | || |||||||| |||||||| || || ||||| ||||||||    
T  15800337 aaaaatactagtatatgagtacatgccgaattcaagccttgactttca 15800290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 15704445 - 15704249
Alignment:
Q  21 ttagtagatggaacagaagttgcaatcaaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgc 120  Q
    |||| ||||||||||||| ||||  | ||||||||  |   ||| |||| ||||||| |||| || ||||||||||||||||||||||| |||||| ||     
T  15704445 ttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggtgcagaggaattcaagaatgaagtaatctttatagctaaactga 15704346  T
Q  121 aacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaaagttgcttgtatatgaatacatgccaaactctagcctcgactttca 217  Q
    |||| |||||||| |||| ||| || ||||| ||||||||||| |  |||||| | || |||||||| || | |||||| || ||||| ||||||||    
T  15704345 aacacagaaacctcgtgaaactcttaggttgctgcattgaggaaagcgaaaagatactagtatatgactataagccaaattcaagccttgactttca 15704249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 15693618 - 15693524
Alignment:
Q  48 aaaaggctctctataacatctggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagact 142  Q
    ||||||||||| | ||| ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||||||| | |||||||| |||||    
T  15693618 aaaaggctctcaagaacttctggtcaaggctcagaggagttcaagaatgaagtaatgtttatagcgaaattgcaacatcgcaaccttgtaagact 15693524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 15813876 - 15813728
Alignment:
Q  69 ggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatg 168  Q
    |||||||||| ||| ||||| |||||||||||||| || || || ||| | ||||||||||||||||||| ||| || ||||| ||| |||| || ||||    
T  15813876 ggtcaaggtttagaggagtttaagaatgaagtaattttcatagcgaaacttcaacatagaaaccttgtgaaactcttaggttgctgctttgaagaaaatg 15813777  T
Q  169 aaaagttgcttgtatatgaatacatgccaaactctagcctcgactttca 217  Q
    ||||| | || |||||||| || |||||||| || |||||  |||||||    
T  15813776 aaaagatactagtatatgagtatatgccaaattcaagccttaactttca 15813728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 32166707 - 32166608
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    ||||||| |||||||||||||||||| | || ||||||||||||||| || ||||||||| |||||||  ||| |||| ||||||||  | |||||||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 32166816 - 32166727
Alignment:
Q  402 atttaacatgtgctctacatcactttcgttccaaaattgaatcgtatttgtcacgagggataaattactccaaattcatcaaggaaaaat 491  Q
    |||||||||||| | |||||| ||||||||||||||| |||||||| ||||||  || | |||||||| || |||||||||| |||||||    
T  32166816 atttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaat 32166727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 15792236 - 15792174
Alignment:
Q  69 ggtcaaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaac 131  Q
    |||||||||| ||| ||||||||||||||||||||||| || |||||| ||||||| ||||||    
T  15792236 ggtcaaggtttagaggagttcaagaatgaagtaatcttcatagctaaactgcaacacagaaac 15792174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 508
Target Start/End: Original strand, 33897571 - 33897735
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaat 443  Q
    ||||||| ||||  ||||||||||||| |||||||||| |||     |||| ||||| |||||||||||| | ||||||  |||||||| |||||  |||    
T  33897571 cttcttataatcggttatcattttcatcttaaaaacattaaaaaaaattatctccttcatttaacatgtgatttacatctttttcgttctaaaatctaat 33897670  T
Q  444 cgtatttgtcacgagggataaattactccaaattcatcaaggaaaaatatagactcaccgatata 508  Q
    ||| ||| |||  ||   ||||||||||  |||| ||||||||||||| ||| |||  |||||||    
T  33897671 cgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaaatgtaggctcgtcgatata 33897735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 37010400 - 37010310
Alignment:
Q  362 cattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgtatttgt 452  Q
    ||||||||| | ||||||||||||||| || ||||| || |||||||||||| |||  ||| | ||| ||||| ||| ||||| |||||||    
T  37010400 cattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgt 37010310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 33897743 - 33897807
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgt 412  Q
    |||| ||||||||  |||||||| | |||||||||||| ||||| |||||||| ||| |||||||    
T  33897743 ttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 34695832 - 34695908
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacat 421  Q
    |||||||||||| ||||||||||| ||| ||||  |||||| ||||| |  ||||| ||| |||||||| |||||||    
T  34695832 ttcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtgatctacat 34695908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 348 - 507
Target Start/End: Original strand, 34891371 - 34891529
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    |||||||  |||||||||||||| |||| |||||||||||||||||| | ||| |||||||||||| |||| ||| ||||| |||| |||| |||| |||    
T  34891371 ttacaattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatctagatctctttcattcccaaatcgaattgta 34891470  T
Q  448 tttgtcacgagggataaattactccaaattcatcaaggaaaaatatagactcaccgatat 507  Q
    ||||||| ||||| |||||||| || | |||||||||||| ||||||| |||||||||||    
T  34891471 tttgtcatgaggggtaaattac-cccagttcatcaaggaagaatataggctcaccgatat 34891529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 348 - 501
Target Start/End: Complemental strand, 3191803 - 3191650
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    ||||||||||||||| ||||||| || ||||||| ||| || ||||| ||||| |||||| ||||| | |||||| ||||| || |||||||||||||||    
T  3191803 ttacaatcaattatcgttttcatctttaaaacattaaatttatttatctccttcatttaagatgtgatttacatccctttcatttcaaaattgaatcgta 3191704  T
Q  448 tttgtcacgagggataaattactccaaattcatcaaggaaaaatatagactcac 501  Q
    |||| || || || ||||||||  | ||| |||  ||||||||| |||||||||    
T  3191703 tttgacatgaagggtaaattaccgccaatacatggaggaaaaatgtagactcac 3191650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 491
Target Start/End: Original strand, 42012641 - 42012781
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    ||||||||| |||| || || || |||||||||||||||||||| || |  || |||||| ||||| | ||||||  |||||||||||||| ||||| ||    
T  42012641 ttacaatcagttatgatctttatcttaaaaacatcaaacttcttaatct--ttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcata 42012738  T
Q  448 tttgtcacgagggataaattactccaaattcatcaaggaaaaat 491  Q
    | ||||| |||||||||||||| || |||| |||||||||||||    
T  42012739 tatgtcatgagggataaattac-cccaattaatcaaggaaaaat 42012781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 32962464 - 32962358
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaat 443  Q
    ||||| ||||||||||||||| |||||||||| || ||||||||| || || ||||||||| ||||| || |||||||   ||| ||| |||||| ||||    
T  32962464 cttctgacaatcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaat 32962365  T
Q  444 cgtattt 450  Q
    | |||||    
T  32962364 catattt 32962358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 31171365 - 31171313
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttc 397  Q
    ||||||||| |||||| ||||||||| ||||||||||||| |||||| |||||    
T  31171365 ttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttc 31171313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 31152799 - 31152738
Alignment:
Q  349 tacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacat 410  Q
    ||||| |||||| ||||||||| ||||||||||||| |||||| ||||| || ||| |||||    
T  31152799 tacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 32988667 - 32988604
Alignment:
Q  262 ttttttctacgttacccctcgatgaattggggggtaatttactcctttcaaggaaaaatcatatt 326  Q
    |||||| ||| ||| |||||||||||||| |||||||||||| | | |||| |||||||||||||    
T  32988667 ttttttatacattatccctcgatgaattg-ggggtaatttacacatatcaaagaaaaatcatatt 32988604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 348 - 500
Target Start/End: Complemental strand, 25234436 - 25234284
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||| ||||| ||||||  |||| | || | | ||| ||||||||||| ||||||||    
T  25234436 ttacaatcagttatcactttcattttaaaaacatcaaacttatttatctccttcatttaaggtgtgatttatacctcttacgttccaaaatcgaatcgta 25234337  T
Q  448 tttgtcacgagggataaattactccaaattcatcaaggaaaaatatagactca 500  Q
    ||||||| ||| | |||||||| |  |||||||||||||||||| ||| ||||    
T  25234336 tttgtcatgagcggtaaattacccgtaattcatcaaggaaaaatgtaggctca 25234284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 36290197 - 36290325
Alignment:
Q  72 caaggttcagaagagttcaagaatgaagtaatctttattgctaaattgcaacatagaaaccttgtgagactattgggttgttgcattgaggataatgaaa 171  Q
    ||||||| ||| ||||||||||||||| | ||  | || |||||||| ||||||||||| ||||| ||||||||||| ||||  ||| | |   | ||||    
T  36290197 caaggtttagacgagttcaagaatgaaatgatgctaatagctaaattacaacatagaaatcttgttagactattgggatgttcaattcaaggggaagaaa 36290296  T
Q  172 agttgcttgtatatgaatacatgccaaac 200  Q
    |||| ||||||||||||||||||||||||    
T  36290297 agttacttgtatatgaatacatgccaaac 36290325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 11020145 - 11020059
Alignment:
Q  352 aatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaatt 439  Q
    ||||| ||||||||||||| ||||||| ||||||| | ||||| |||||||||||||||||| | | |||| |||||||| |||||||    
T  11020145 aatcagttatcattttcatcttaaaaatatcaaacct-tttatctcctttatttaacatgtgatttgcatctctttcgtttcaaaatt 11020059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 54000275 - 54000220
Alignment:
Q  358 ttatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtg 413  Q
    |||||||||| || ||||||||||||||||||||||| ||||| |||||| |||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtg 54000220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 25234513 - 25234449
Alignment:
Q  261 gttttttctacgttacccctcgatgaattggggggtaatttactcctttcaaggaaaaatcatatt 326  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||   ||||||| |||||    
T  25234513 gttttttctacgttacccttcgatgaattg-ggggtaatttacccctttccgtgaaaaattatatt 25234449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 20512892 - 20512832
Alignment:
Q  352 aatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgt 412  Q
    |||||||| |||||||||| ||| |||||||||||||||| || | ||| |||||||||||    
T  20512892 aatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgt 20512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 22050624 - 22050682
Alignment:
Q  260 tgttttttctacgttacccctcgatgaattggggggtaatttactcctttcaaggaaaaat 320  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||| ||||| || |||||||    
T  22050624 tgttttttctacgttaccccttgatgattt--ggggtaatttaccccttttaaagaaaaat 22050682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 22050732 - 22050768
Alignment:
Q  377 aacatcaaacttctttatttcctttatttaacatgtg 413  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  22050732 aacatcaaacttcttcatttccttcatttaacatgtg 22050768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 348 - 454
Target Start/End: Original strand, 23577014 - 23577120
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| ||||  | |||||| ||||  ||||||||| ||||||||    
T  23577014 ttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatttaagatgttatttacatctcttttattccaaaatcgaatcgta 23577113  T
Q  448 tttgtca 454  Q
    |||||||    
T  23577114 tttgtca 23577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 20206527 - 20206476
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttattt 396  Q
    |||||||||||||||||||||||||| | || ||||||||||||||| ||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaattt 20206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 22100550 - 22100499
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttattt 396  Q
    |||||||||||||||||||||||||| | || ||||||||||||||| ||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaattt 22100499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 32342603 - 32342646
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaactt 388  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactt 32342646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 491
Target Start/End: Complemental strand, 7113854 - 7113710
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgta 447  Q
    |||||||||||||| ||||||||  |||  |||||||| ||||||||  |||| |||||| ||||| | |||||| |||| |||||| ||||||||||||    
T  7113854 ttacaatcaattattattttcatcataactacatcaaatttctttatcaccttcatttaagatgtgatttacatctcttttgttccataattgaatcgta 7113755  T
Q  448 tttgtcacgagggataaattactcc-aaattcatcaaggaaaaat 491  Q
    |||| ||  || | |||||||| ||  ||||||||||||||||||    
T  7113754 tttgacatcagcggtaaattacccctcaattcatcaaggaaaaat 7113710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 469
Target Start/End: Complemental strand, 39730519 - 39730394
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaat 443  Q
    ||||||||||||| ||||||||  ||| |||||||| || ||||||||||| ||||| ||  || ||||  | |||||| | ||||||||||||| ||||    
T  39730519 cttcttacaatcagttatcattaccatcttaaaaacttcgaacttctttatctccttcatcgaagatgtaatatacatctcgttcgttccaaaatcgaat 39730420  T
Q  444 cgtatttgtcacgagggataaattac 469  Q
     |||| ||||| ||||| ||||||||    
T  39730419 tgtatatgtcatgaggggtaaattac 39730394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 450
Target Start/End: Original strand, 973114 - 973219
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    |||||||||| | |||||||||| || | |||||||| ||| ||||| || ||||||||| |||||||| ||| |||| | ||| || ||||||||||||    
T  973114 ttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatc 973213  T
Q  445 gtattt 450  Q
     |||||    
T  973214 atattt 973219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 2243389 - 2243311
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatc 422  Q
    ||||||||||| | ||| ||||||||| | || ||||||||||||||| || ||||| ||| |||||||| ||| ||||    
T  2243389 cttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatc 2243311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 5205581 - 5205524
Alignment:
Q  374 aaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgtt 431  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||| ||||  |||||||    
T  5205581 aaaaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgtt 5205524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 450
Target Start/End: Complemental strand, 7215368 - 7215264
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    ||||||||||||| || ||||||||| | || |||||||||||||||| | | ||| ||| || ||||| ||| ||||  |||| ||| |||||||||||    
T  7215368 ttcttacaatcaactaccattttcatctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatc 7215270  T
Q  445 gtattt 450  Q
     |||||    
T  7215269 atattt 7215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 450
Target Start/End: Original strand, 37077763 - 37077868
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    |||||||||||| ||| ||||||||| | |||||||||||| ||||| ||||  || ||| |||||||| |||  ||  | ||| || ||||||||||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattgaatc 37077862  T
Q  445 gtattt 450  Q
     |||||    
T  37077863 ttattt 37077868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 469
Target Start/End: Complemental strand, 13712987 - 13712867
Alignment:
Q  349 tacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgtat 448  Q
    |||||||  ||| |||||| || |||||||  |||||||| ||||| ||||| |||||||||||| |||||||| |||| |||||||||   ||| ||||    
T  13712987 tacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctctttggttccaaaacctaattgtat 13712888  T
Q  449 ttgtcacgagggataaattac 469  Q
    ||||||  |||||||||||||    
T  13712887 ttgtcattagggataaattac 13712867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 477
Target Start/End: Original strand, 16576420 - 16576552
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    |||||||||||| ||||||||||||||| ||||||| ||||| |||| || ||||| ||||||||||   ||| ||||   |||||| ||  ||||||||    
T  16576420 ttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatc 16576519  T
Q  445 gtatttgtcacgagggataaattactccaaatt 477  Q
     |||||||||  |  |||||||||| |||||||    
T  16576520 atatttgtcattaaagataaattaccccaaatt 16576552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 485
Target Start/End: Original strand, 16576251 - 16576390
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    |||||||||||||||| ||||||| | | || ||||||||||||||| || ||||| ||| |||||||| ||| | || | ||||||||| ||| |||||    
T  16576251 ttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 16576350  T
Q  445 gtatttgtcacgagggataaattactccaaattcatcaagg 485  Q
     || || |||  |||| |||||||  || ||||||||||||    
T  16576351 atacttatcattaggggtaaatta-acccaattcatcaagg 16576390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 2909844 - 2909930
Alignment:
Q  364 ttttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatcgtattt 450  Q
    |||||||||||||||||||||||||||| || ||||| ||| |||||||  |||||||    ||| ||| ||||||||||| |||||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttattt 2909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 35371117 - 35371182
Alignment:
Q  348 ttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtg 413  Q
    ||||||||| ||| ||||||||| | || |||||||||||||||| || |||| ||||||||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtg 35371182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 431
Target Start/End: Original strand, 16863459 - 16863545
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgtt 431  Q
    |||||||||||| ||| ||||||||| | || ||||||||| ||||| || | ||||||| || ||||| |||||||| | ||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgtt 16863545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 13712822 - 13712757
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacat 410  Q
    ||||||| |||| ||| ||||| ||| |||| |||||||||||||||||| | ||||||| |||||    
T  13712822 ttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 509
Target Start/End: Complemental strand, 44342254 - 44342107
Alignment:
Q  363 attttcattttaaaaacatcaaacttctttatttcctttattt-aacatgtgctctacatcactttcgttccaaaattgaatcgtatttgtcacgaggga 461  Q
    |||||||| ||||||||||||| ||||||||| ||  |||||| || | ||| | || ||| |||||||  ||||||  |||| ||||| ||| || |||    
T  44342254 attttcatcttaaaaacatcaatcttctttatctctattattttaagacgtgatttatatccctttcgtatcaaaatcaaatcctatttatcatgatgga 44342155  T
Q  462 taaattactccaaattcatcaaggaaaaatatagactcaccgatatag 509  Q
     |||||| ||| |||||||||||||||||| ||| |||||||||||||    
T  44342154 caaattattcccaattcatcaaggaaaaatgtaggctcaccgatatag 44342107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 68100 - 68198
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaat 443  Q
    |||||||||| | ||| |||||| |||| || |||||| |||||||| || ||||| |||||||||||| ||| ||||  |||||||||||||| ||||    
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 486
Target Start/End: Original strand, 35956986 - 35957125
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttatttaacatgtgctctacatcactttcgttccaaaattgaatc 444  Q
    |||||||||| ||||| |||||| || | ||||||||||||||| |  ||||| ||||||||| ||||| ||| ||||  |||||||| ||||| |||      
T  35956986 ttcttacaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatctatttcgttcaaaaatcgaact 35957085  T
Q  445 gtatttgtcacgagggataaattactccaaattcatcaagga 486  Q
      | |||||| ||||  ||||||||||  |||||||||||||    
T  35957086 caagttgtcatgagg--taaattactctcaattcatcaagga 35957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 35660763 - 35660808
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttct 390  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||    
T  35660763 ttcttaaaatcaattaccattttcatttcaaaaacatcaaacttct 35660808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 24873768 - 24873811
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaactt 388  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  24873768 ttcttacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 24874601 - 24874644
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaactt 388  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 10775166 - 10775212
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctt 391  Q
    |||||| ||||||||| ||||||||| |||| |||||||||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttctt 10775212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 45967898 - 45967838
Alignment:
Q  345 ttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctttattt 405  Q
    |||||||||||  ||||||||||||||| ||||| || ||| ||||| || ||||||||||    
T  45967898 ttcttacaatctgttatcattttcatttcaaaaatattaaatttcttcatctcctttattt 45967838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 52432835 - 52432887
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttattt 396  Q
    ||||||||||| | ||||||||||| | | |||||||||||||||||| ||||    
T  52432835 cttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattt 52432887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 62800 - 62744
Alignment:
Q  344 cttcttacaatcaattatcattttcattttaaaaacatcaaacttctttatttcctt 400  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||||||||||| |||||    
T  62800 cttcttagaatcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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