View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6582_high_3 (Length: 410)
Name: NF6582_high_3
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 10046320 - 10045940
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046320 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
10046221 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046220 |
ttgcaatctccgagttttgattcaagcgagtatgacggaattgtaccggttaccaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtg |
10046121 |
T |
|
| Q |
214 |
ccggcaaattcgccggaacaactttttctacggggattttcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcgga |
313 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046120 |
ccggcaaattcgccggaacaactttttcaacggggattctcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcgga |
10046021 |
T |
|
| Q |
314 |
ttcatcttcttcgtcgtattgaacagcgcgagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046020 |
ttcatcttcttcgtcgtattgaacagcgcgagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataag |
10045940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 39676264 - 39676079
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||| | ||| | || |||||| |
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| T |
39676264 |
tcctaatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgt |
39676165 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
199 |
Q |
| |
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||||||||| || || |||||||||||||| || ||||||| || | || || |||| |||||||| |||||||||||||| |
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| T |
39676164 |
cggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatgga |
39676079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 10873605 - 10873790
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| |
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| T |
10873605 |
tcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgt |
10873704 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
199 |
Q |
| |
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||||||||| || || |||||||||||||| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
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| T |
10873705 |
cggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10873790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 10878676 - 10878861
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| |
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| T |
10878676 |
tcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgt |
10878775 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
199 |
Q |
| |
|
||||||||| || || |||||||||||||| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
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| T |
10878776 |
cggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10878861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 10883747 - 10883932
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| |
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| T |
10883747 |
tcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgt |
10883846 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
199 |
Q |
| |
|
||||||||| || || |||||||||||||| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
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| T |
10883847 |
cggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10883932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 10866700 - 10866515
Alignment:
| Q |
14 |
tcctaatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgt |
113 |
Q |
| |
|
||||||||| |||| || |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | || || |||||| |
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| T |
10866700 |
tcctaatatagaattgtagtcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgt |
10866601 |
T |
|
| Q |
114 |
ttgcaatctccgagttttgattcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
199 |
Q |
| |
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||||||||| || || |||||||||||||| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
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| T |
10866600 |
cggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10866515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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