View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6582_high_6 (Length: 302)
Name: NF6582_high_6
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_high_6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 7194681 - 7194964
Alignment:
| Q |
18 |
agtactacatagatcatcctttagaggctatgaaagtgattatgtgcttgcatgttgaatactttccttgaaaaaaggctaggaacaaacaatatgatta |
117 |
Q |
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| T |
7194681 |
agtactacatagatcatcctttagaggctatgaaagtgattatgtgcttgcatgttgaatactttccttgaaaaaaggctaggaacaaacaatatgatta |
7194780 |
T |
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| Q |
118 |
gtgcttgcatgttgaatacttgtcatagtttctctcatctcatctcagtactacatacaactatgacacatttttaggccactttgcttaggtgtcaaat |
217 |
Q |
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| T |
7194781 |
gtgcttgcatgttgaatacttgtcatagtttctctcatctcatctcagtactacatacaactatgacacatttttaggccactttgcttaggtgtcaaat |
7194880 |
T |
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| Q |
218 |
tcttaagccatcattgccaaatcatcattttaaaaagttaaaattttaaccacttttaccattccttcatcaagaaacatcattt |
302 |
Q |
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| T |
7194881 |
tcttaagccatcattgccaaatcatcattttaaaaagttaaaattttaaccactttta-cattccttcatcaagaaacatcattt |
7194964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 9667228 - 9667138
Alignment:
| Q |
211 |
gtcaaattcttaagccatcattgccaaatcatcattttaaaaagttaaaattttaaccacttttaccattccttcatcaagaaacatcattt |
302 |
Q |
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| T |
9667228 |
gtcacattcttaagccatccttgccaaatcatcattttcgaaagttcaaattttaaccacttttagcatt-catgatcaagaaacatcattt |
9667138 |
T |
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