View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6582_high_8 (Length: 250)
Name: NF6582_high_8
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_high_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 32473166 - 32473406
Alignment:
| Q |
11 |
cagagatacttaaagcaagaaatatatcgaagagttggtgctgagttagctaaaaatcgaagtttatcataagcttggtgtaaatttcttaaaaaactag |
110 |
Q |
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| T |
32473166 |
cagaaatacttaaagcaagaaatatatcgaagagttggtgctgagttaactaaaaatcgaagtttatcataagcttggtgtaaattccttaaaaaaccag |
32473265 |
T |
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| Q |
111 |
ctttcttttttcaatgtatccgggattgaactatttggtcctactctttcttgatgctctaatcc-aaagtaaggatgacttaaagtttaaagaatagtt |
209 |
Q |
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| T |
32473266 |
ctttcttttttcaatgtacccgggattgaactatttggtcctactctttcttgatgctctaatccaaaagtaaggatgacttaaagcttaaagaatactt |
32473365 |
T |
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| Q |
210 |
acaaatgaatttacatttatggtcacatcaacttctaatct |
250 |
Q |
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| T |
32473366 |
acaaatgaatttacatttatggttacatcaacttctaatct |
32473406 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 18334671 - 18334770
Alignment:
| Q |
15 |
gatacttaaagcaagaaatatatcgaagagttggtgctgagttagctaaaaatcgaagtttatcataagcttggtgtaaatttcttaaaaaactagcttt |
114 |
Q |
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| T |
18334671 |
gatacttccagcaagaaatatatagaagagttggtgctgggctagccgaaaatcaaagtttatcagaagcttggtctaaaattcctgaaaaattagcttt |
18334770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 18152000 - 18151914
Alignment:
| Q |
28 |
agaaatatatcgaagagttggtgctgagttagctaaaaatcgaagtttatcataagcttggtgtaaatttcttaaaaaactagcttt |
114 |
Q |
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| T |
18152000 |
agaaatatatcgaagagttggtgctgggctagccgaaaatcaaaatttattagaagcttggtctaaaattcttgaaaaaatagcttt |
18151914 |
T |
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