View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6582_low_1 (Length: 672)

Name: NF6582_low_1
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6582_low_1
NF6582_low_1
[»] chr3 (3 HSPs)
chr3 (110-656)||(13772020-13772574)
chr3 (18-50)||(13771928-13771960)
chr3 (612-656)||(25189919-25189963)
[»] chr5 (3 HSPs)
chr5 (581-654)||(27336743-27336816)
chr5 (551-633)||(35455976-35456058)
chr5 (581-654)||(32269781-32269854)
[»] chr6 (3 HSPs)
chr6 (581-645)||(29338072-29338136)
chr6 (581-654)||(33220695-33220768)
chr6 (582-654)||(45661-45733)
[»] chr4 (1 HSPs)
chr4 (582-654)||(53619637-53619709)
[»] chr2 (3 HSPs)
chr2 (583-654)||(5532471-5532542)
chr2 (612-654)||(27502443-27502485)
chr2 (581-654)||(41867892-41867965)
[»] chr7 (3 HSPs)
chr7 (581-654)||(982999-983072)
chr7 (581-654)||(19277343-19277416)
chr7 (581-654)||(28517271-28517344)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 110 - 656
Target Start/End: Original strand, 13772020 - 13772574
Alignment:
Q  110 ctgagctttgggaacatgaacaaatttgttctcactcatttgaagcaaagtgttgaaccgtttcatg---------aatgtcacaaattcgatttcagaa 200  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||    
T  13772020 ctgagttttggggacataaacaaatttgttctcactcatttgaagcaaagtgttgaaccgtttcatgtgtttcatgaatgtcacaaattcaatttcagaa 13772119  T
Q  201 cactgacaagggtttaggattgttgacaaaggattccaatcaaaatttatagagtttgtgttatttgaatatcaaattaatgatgtttacaatgtatatc 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13772120 cactgacaagggtttaggattgttgacaaaggattccaataaaaattta--gagtttgtgttatttgaatatcaaattaatgatgtttacaatgtatatc 13772217  T
Q  301 tctcttttactattttctttagaggaaattacacatataatattgtaattgacannnnnnnnnnncttctagaagatataatattttttcattccagaat 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||            ||||| ||||||||||||||||| |||| |||||    
T  13772218 tctctttcactattttctttagaggaaattacacatataatattgtaattgacatttattt-----ttctaaaagatataatatttttttattctagaat 13772312  T
Q  401 taatatgtacgtatgaatgaaagacaaaagagccatttgggtggtaaaaattctttcaaaacaacattcatgaacataggggatacaacac------att 494  Q
    | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||      |||    
T  13772313 tcatatgtacatatgaatgaaagacaaaagagtcatttgggtggtaaaaattctttgaaaacaacattcatgaacataggggacacaacacattgttatt 13772412  T
Q  495 gttattgttatgtatgaccttaaaccgtttgacctttttgtaggagatcaacggcttctggtgctaggaaggaaaatttgccagacgcaaatggtataaa 594  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||    
T  13772413 gttattgttatgtatgaccttaaaccgtttgacctttttgaaggagatcaacggcttctggtgctaggaaggaaaagttgtcaaacgcaaatggtataaa 13772512  T
Q  595 agtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagctttga 656  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  13772513 agtgtgttgattgatggaacacgttttctcatgtttgatggctttgcttgaagcagctttga 13772574  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 13771928 - 13771960
Alignment:
Q  18 accactgtggtgtggttgttgcattcaagataa 50  Q
    |||||||||||||||||||||||||||||||||    
T  13771928 accactgtggtgtggttgttgcattcaagataa 13771960  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 656
Target Start/End: Complemental strand, 25189963 - 25189919
Alignment:
Q  612 aacacgttttctcatgtttgacggctttgcttgaagcagctttga 656  Q
    ||||||||||||||| |||||||  |||||||||||| |||||||    
T  25189963 aacacgttttctcatatttgacgattttgcttgaagcggctttga 25189919  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 27336743 - 27336816
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||| |||||||||    |||||| |||||||||||||||  |||||||||| ||| ||||    
T  27336743 gcaaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttt 27336816  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 633
Target Start/End: Original strand, 35455976 - 35456058
Alignment:
Q  551 tctggtgctaggaaggaaaatttgccagacgcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgac 633  Q
    |||||||||||||||  ||| ||| || | ||||| ||||||||||  ||||||||| |  |||||| |||||||||||||||    
T  35455976 tctggtgctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttgac 35456058  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 32269854 - 32269781
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    |||||||||||||||| ||||||||||    |||||  |||||||||||||||  ||||| |||| ||||||||    
T  32269854 gcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttt 32269781  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 645
Target Start/End: Complemental strand, 29338136 - 29338072
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttga 645  Q
    ||||||||||||| ||  ||||||||| |  |||||||||||||||||||| | |||||||||||    
T  29338136 gcaaatggtataagagcatgttgattgttagaacacgttttctcatgtttggcagctttgcttga 29338072  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 33220768 - 33220695
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||  |||||||||   | ||||| ||||||||||||| |  |||||||||| ||||||||    
T  33220768 gcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggccactttgcttgatgcagcttt 33220695  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 654
Target Start/End: Complemental strand, 45733 - 45661
Alignment:
Q  582 caaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||| |||||||  |||||||||    |||||||||||||||||||||   |||||||||| ||||||||    
T  45733 caaatggaataaaagcatgttgattgtcagaacacgttttctcatgtttgatcactttgcttgatgcagcttt 45661  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 654
Target Start/End: Original strand, 53619637 - 53619709
Alignment:
Q  582 caaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    |||||||||||||||  |||||||||    |||||||||||||||||||| |  |||||||||| ||||||||    
T  53619637 caaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttt 53619709  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 654
Target Start/End: Original strand, 5532471 - 5532542
Alignment:
Q  583 aaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    |||| |||||||||  |||||||||    ||||||||||||||||||||||  |||||||||| ||||||||    
T  5532471 aaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacgcagcttt 5532542  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 612 - 654
Target Start/End: Original strand, 27502443 - 27502485
Alignment:
Q  612 aacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||||||||  |||||||||| ||||||||    
T  27502443 aacacgttttctcatgtttgaccactttgcttgacgcagcttt 27502485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 41867965 - 41867892
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||  |||||||||    |||| | |||||||||||||||  |||||||||| ||||||||    
T  41867965 gcaaatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagcttt 41867892  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 982999 - 983072
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||  |||||||||    |||||| ||||||||||||| |  |||||||||| ||||||||    
T  982999 gcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgcagcttt 983072  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Original strand, 19277343 - 19277416
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    ||||||||||||||||  |||||||||    |||||| ||||||||||||| |  |||||||||| ||||||||    
T  19277343 gcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgcagcttt 19277416  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 654
Target Start/End: Complemental strand, 28517344 - 28517271
Alignment:
Q  581 gcaaatggtataaaagtgtgttgattgatgaaacacgttttctcatgtttgacggctttgcttgaagcagcttt 654  Q
    |||||||||||||||   |||||||||   ||||||| ||||||||||||| |  |||||||||| ||||||||    
T  28517344 gcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttt 28517271  T

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