View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6582_low_3 (Length: 517)
Name: NF6582_low_3
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 66 - 506
Target Start/End: Original strand, 47116692 - 47117128
Alignment:
| Q |
66 |
aagaaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctca |
165 |
Q |
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| T |
47116692 |
aagaaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctca |
47116791 |
T |
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| Q |
166 |
tacccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaaga |
265 |
Q |
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| T |
47116792 |
tacccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaaga |
47116891 |
T |
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| Q |
266 |
tattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatc |
365 |
Q |
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| T |
47116892 |
tattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatc |
47116991 |
T |
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| Q |
366 |
aacgtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctca |
465 |
Q |
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| T |
47116992 |
aacgtatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctca |
47117087 |
T |
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| Q |
466 |
acgggaacgccaacatcaccatcttcgccggtgatgatgtc |
506 |
Q |
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| T |
47117088 |
acgggaacgccaacatcaccgtcttcaccggtgatgatgtc |
47117128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 47118545 - 47118512
Alignment:
| Q |
43 |
taatttaatataaattaaattgtaagaaaatttc |
76 |
Q |
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| T |
47118545 |
taatttaatataaattaaattgtaagaaaatttc |
47118512 |
T |
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