View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6582_low_6 (Length: 357)
Name: NF6582_low_6
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 78 - 350
Target Start/End: Complemental strand, 10046933 - 10046661
Alignment:
| Q |
78 |
gatataccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccgg |
177 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046933 |
gatataccaataacatccatatcaggaaaatcgctttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccgg |
10046834 |
T |
|
| Q |
178 |
ttgaacatgtaaatctaatgtataaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataacaaaatcagtca |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10046833 |
ttgaacatgtaaatctaatgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaaatctacttgacctgaataacaaaatcagtca |
10046734 |
T |
|
| Q |
278 |
atcaaattaataaaaatctataaagcattaacacgcagacactcaatataagagtatgcatgttgacatgaca |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |
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|
| T |
10046733 |
atcaaattaataaaaatctataaagcattaacacgcagacactcaatataagagtttacgtgttaacatgaca |
10046661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39676908 - 39676649
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39676908 |
cctcacaaaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
39676809 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| |
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|
| T |
39676808 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtat |
39676709 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgaccta |
260 |
Q |
| |
|
|||||||||||||| || || | ||||||| |||||||||| |||||||||||||||||| |
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|
| T |
39676708 |
aaattctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgaccta |
39676649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10887004 - 10887268
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10887004 |
cctcacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
10887103 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||| ||||| |
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|
| T |
10887104 |
gggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtat |
10887203 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataa |
265 |
Q |
| |
|
||||||||||||||||| || | ||||||||| |||||||| |||||||||||||||||| |||| |
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|
| T |
10887204 |
aaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataa |
10887268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 10867365 - 10867101
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10867365 |
cctcacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
10867266 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||| |||| |
|
|
| T |
10867265 |
gggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtac |
10867166 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataa |
265 |
Q |
| |
|
||||||||||||||||| || | ||||||||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
10867165 |
aaattctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataa |
10867101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10872947 - 10873211
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10872947 |
cctcacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
10873046 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| ||||| |
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|
| T |
10873047 |
gggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtat |
10873146 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataa |
265 |
Q |
| |
|
||||||||||| ||||| || | ||||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
10873147 |
aaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10873211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10878018 - 10878282
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878018 |
cctcacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
10878117 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| ||||| |
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|
| T |
10878118 |
gggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtat |
10878217 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataa |
265 |
Q |
| |
|
||||||||||| ||||| || | ||||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
10878218 |
aaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10878282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 10883089 - 10883353
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883089 |
cctcacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatc |
10883188 |
T |
|
| Q |
101 |
aggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| ||||| |
|
|
| T |
10883189 |
gggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtat |
10883288 |
T |
|
| Q |
201 |
aaattctttcctgccattgttgatttaatactttgtaatctcgcaaatctacttgacctagataa |
265 |
Q |
| |
|
||||||||||| ||||| || | ||||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
10883289 |
aaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10883353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10047113 - 10047038
Alignment:
| Q |
1 |
cctcacaaaccacttatttccctcccccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttcc |
76 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
10047113 |
cctcacacaccactgatttccctctcccttcaatccaattcaccgccgcggctttcttatccgaacaaaaatttcc |
10047038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 37949567 - 37949438
Alignment:
| Q |
64 |
aacaaaaatttccagatataccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcc |
163 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| ||||| |||||| || |||| |||||||| ||||| || || ||||| || ||||||||||| || |
|
|
| T |
37949567 |
aacagaaattacctgatatgccaataacatccatgtcagggaaatcatttcgaaggaaatcaagaacgttctgcacccctttggagaccatgttcatccc |
37949468 |
T |
|
| Q |
164 |
cattgcatcaccggttgaacatgtaaatct |
193 |
Q |
| |
|
||| |||||||| || |||||||||||| |
|
|
| T |
37949467 |
catggcatcacccgtactacatgtaaatct |
37949438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 30708446 - 30708537
Alignment:
| Q |
84 |
ccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcacc |
175 |
Q |
| |
|
||||| |||||||| |||||||| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
30708446 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
30708537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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