View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6582_low_9 (Length: 251)
Name: NF6582_low_9
Description: NF6582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6582_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34092610 - 34092365
Alignment:
| Q |
1 |
taacgagcaattataattaatttaaaaaatcttttattgtaggcttgttaaagannnnnnnaaaaccaatattgatgttttaattaaatttgaaagatat |
100 |
Q |
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| T |
34092610 |
taacgagcaattataattaatttaaaaaatcttttattgtaggcttgttaaagatttttttaaaaccaattttgatgttttaattaaatttgaaagatat |
34092511 |
T |
|
| Q |
101 |
tttnnnnnnncgatgttatgttaaagatgaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatat |
200 |
Q |
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| T |
34092510 |
tttaaaaaaacgatgttatgttaaagattaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatat |
34092411 |
T |
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| Q |
201 |
gatgtgatttgttttcaaaggagattgtatatgagatgatgtccat |
246 |
Q |
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| T |
34092410 |
gatgtgatttgttttcaaaggagattgtatatgatgtgatgtccat |
34092365 |
T |
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