View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6583_high_4 (Length: 429)

Name: NF6583_high_4
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6583_high_4
NF6583_high_4
[»] chr5 (7 HSPs)
chr5 (19-419)||(40181279-40181680)
chr5 (27-219)||(38605768-38605960)
chr5 (19-147)||(41885856-41885984)
chr5 (24-90)||(40180569-40180635)
chr5 (354-415)||(40180938-40180999)
chr5 (327-396)||(38606068-38606137)
chr5 (327-384)||(41885617-41885674)
[»] chr1 (1 HSPs)
chr1 (119-415)||(46358821-46359115)
[»] chr8 (7 HSPs)
chr8 (235-419)||(44459246-44459430)
chr8 (235-419)||(44466779-44466963)
chr8 (327-396)||(34502619-34502688)
chr8 (119-214)||(44460150-44460245)
chr8 (119-214)||(44467683-44467778)
chr8 (314-396)||(44459962-44460044)
chr8 (314-396)||(44467495-44467577)
[»] chr6 (1 HSPs)
chr6 (24-79)||(410919-410974)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 40181279 - 40181680
Alignment:
Q  19 aataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataacagagaaggattctat 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40181279 aatatgtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataactgagaaggattctat 40181378  T
Q  119 gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaa-aatatgtatttcttccttagttt 217  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  40181379 gagtttattgagaatccttgcattaagaaagtcagtttcatagcggccaatatacttaagcatgtcccacagaaaaaaatatgtatttcttccttagttt 40181478  T
Q  218 aacattaaaatcatagtgaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatcttt 317  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181479 aacattgaaatcatagtgaacagtagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatcttt 40181578  T
Q  318 atgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatgat 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  40181579 atgaagtatataagattctgaggtggaacttctagggtttcagctaatttagtttgacaagaggtttcaataacactgattagaaagtgttgttgatgat 40181678  T
Q  418 gt 419  Q
    ||    
T  40181679 gt 40181680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 38605768 - 38605960
Alignment:
Q  27 tcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataacagagaaggattctatgagtttat 126  Q
    ||||||||||||||||||||||| || |||||  |||||||||| |||||||| | ||| ||||   | || ||||  |||||| ||| |||||| | ||    
T  38605768 tcttgatttggcacacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgccttctcgacctataattgagaagaattgtatgaggtgat 38605867  T
Q  127 ttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttagtttaa 219  Q
    | |||||   || |||||||| | | |||| |||  ||||||| ||||||||||  ||||||||||||| |||||  ||||||||||||||||    
T  38605868 tgagaatgggtgggttaagaaggccggtttgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattcttccttagtttaa 38605960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 41885984 - 41885856
Alignment:
Q  19 aataagtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttccttgctgccccataacagagaaggattctat 118  Q
    |||| ||||||||||||||| ||||||||||  | ||||| ||||||||||||||  |||| || || ||||   |||||||||  |||||| |||||||    
T  41885984 aatatgtatcttgatttggctcacattgaaaagcctcaaatttatgaaaaacatcgtgtgcagctttcccttctcgccccataattgagaagaattctat 41885885  T
Q  119 gagtttatttagaatccttgcgttaagaa 147  Q
     ||||||||||||||||  ||||||||||    
T  41885884 tagtttatttagaatccgagcgttaagaa 41885856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 40180569 - 40180635
Alignment:
Q  24 gtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgctgcctttcctt 90  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||    
T  40180569 gtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctt 40180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 40180938 - 40180999
Alignment:
Q  354 gtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg 415  Q
    |||||| | |||||||||||||||||||||| ||||||||||| || ||| | |||||||||    
T  40180938 gtttcaacaaatttagtttgacaagaggttttaataactttgagtaaaaaatgttgttgatg 40180999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 38606068 - 38606137
Alignment:
Q  327 ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga 396  Q
    ||||| || |||||||  || ||| |||||| | ||||||| |||||||||||||||| |||||||||||    
T  38606068 ataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttga 38606137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 41885674 - 41885617
Alignment:
Q  327 ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggttt 384  Q
    |||| ||| ||||||||||| ||| |||||| | |||||||| |||||||||||||||    
T  41885674 ataaaattatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt 41885617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 415
Target Start/End: Complemental strand, 46359115 - 46358821
Alignment:
Q  119 gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttagttta 218  Q
    ||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | ||||||||  |||||||||||||||||||  ||||||||||| | |    
T  46359115 gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttagatga 46359016  T
Q  219 acattaaaatcatagtgaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatcttta 318  Q
    | ||||  ||||  |  | |||| |  | ||||  |  ||||||  |||||| |||| |||||  |||||| ||||| |||| |||||||| || |||||    
T  46359015 atattatcatcagtggaaccagcgg--catatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaacttta 46358918  T
Q  319 tgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg 415  Q
    | ||||  |||||||| |||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | |  ||||| |||||||||    
T  46358917 taaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg 46358821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 419
Target Start/End: Complemental strand, 44459430 - 44459246
Alignment:
Q  235 gaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatctttatgaagtatataagatt 334  Q
    |||||| || || |||||||  ||||||  |||||| |||| |||||  |||||| ||||| |||| |||||||| || |||||| ||||  ||||||||    
T  44459430 gaacagtagagcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt 44459331  T
Q  335 ctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatgatgt 419  Q
     |||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | |  ||||| |||||| ||||||    
T  44459330 atgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgt 44459246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 419
Target Start/End: Complemental strand, 44466963 - 44466779
Alignment:
Q  235 gaacagcagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttattatccttccaaagcatctttatgaagtatataagatt 334  Q
    |||||| || || |||||||  ||||||  |||||| |||| |||||  |||||| ||||| |||| |||||||| || |||||| ||||  ||||||||    
T  44466963 gaacagtagagcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagatt 44466864  T
Q  335 ctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatgatgt 419  Q
     |||||| |||| ||| ||| |||| | |||||||||||||||||||||||||||||||| | |  ||||| |||||| ||||||    
T  44466863 atgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgttgatgt 44466779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 34502619 - 34502688
Alignment:
Q  327 ataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga 396  Q
    |||||||| ||||| | ||| ||| ||||||||| ||||||||||||| |||||| ||||||||||||||    
T  34502619 ataagattatgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttga 34502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 44460245 - 44460150
Alignment:
Q  119 gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttag 214  Q
    ||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | ||||||||  |||||||||||||||||||  |||||||||||    
T  44460245 gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag 44460150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 44467778 - 44467683
Alignment:
Q  119 gagtttatttagaatccttgcgttaagaaagtcagtttcatagcggccaattttcttaagcatgtcccacagaaaaaatatgtatttcttccttag 214  Q
    ||||| ||| |||||||| | | |||||| |||||| | |||| ||||||| | ||||||||  |||||||||||||||||||  |||||||||||    
T  44467778 gagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag 44467683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 44460044 - 44459962
Alignment:
Q  314 ctttatgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga 396  Q
    |||||| ||||  |||||||| ||||| | ||| ||| ||||||||  ||||||||||||  | |||||||||||||||||||    
T  44460044 ctttataaagtggataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttga 44459962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 44467577 - 44467495
Alignment:
Q  314 ctttatgaagtatataagattctgaggtggaacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga 396  Q
    |||||| ||||  |||||||| ||||| | ||| ||| ||||||||  ||||||||||||  | |||||||||||||||||||    
T  44467577 ctttataaagtggataagattatgaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttga 44467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 410974 - 410919
Alignment:
Q  24 gtatcttgatttggcacacattgaaatacgtcaaaattatgaaaaacatcaagtgc 79  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||    
T  410974 gtatcttgatttggaacacattgaaatacctcaaatttatgaaaaacttcaagtgc 410919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University