View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6583_high_6 (Length: 302)
Name: NF6583_high_6
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6583_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38316491 - 38316267
Alignment:
| Q |
1 |
taaattgttattttgaaattcttgcatcaattagttttgttcgttgtcaatttctctctaaccagacaactcttgcaatgttgttttatttatggttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316491 |
taaattgttattttgaaattcttgaatcaattagttttgttcgctgtcaatttctctctaaccagacaactcttgcaatgttgttttatttatggttttt |
38316392 |
T |
|
| Q |
101 |
ggctagacaatttgttcataagcaatggaaattcactatcaaagatatggagtggttactacaatacctgacgatgaaagaaaaccaagttcatcttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316391 |
ggctagacaatttgttcataagcaatggaaattcactatcaaagatatggagtggttactgcagtacctgacgatgaaagaaaaccaagttcatcttttg |
38316292 |
T |
|
| Q |
201 |
ttgctcaagtcgcatggcaaggaaa |
225 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
38316291 |
ttgcacaagtcgcatggcaaggaaa |
38316267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 285
Target Start/End: Original strand, 4734133 - 4734368
Alignment:
| Q |
47 |
tcaatttctctctaaccagacaactcttgcaatgttgttttatttatggttttcggctagacaatttgttcataagcaatggaaattcactatcaaagat |
146 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||| || | ||||||||||||| | ||||||||||| | || |||||||| || ||||| |
|
|
| T |
4734133 |
tcaatttctctataaccaga-aattcttgtaatgttgttttaattcttgttttcggctagataggttgttcataagtagtgaaaattcaccatggaagat |
4734231 |
T |
|
| Q |
147 |
atggagtggttactacaa-tacctgacgatgaaagaaaaccaagttcatcttttgttgctcaagtcgcatggcaaggaaactgggctcacaatgcgagcc |
245 |
Q |
| |
|
|||||||||||||||||| | | | ||||||| ||||| |||||||||||||||||||||| || ||||||| ||| ||| | || || | | | |
|
|
| T |
4734232 |
atggagtggttactacaagcaaataatgatgaaataaaactaagttcatcttttgttgctcaaatcacatggcagagaagctgagatcccagttc---tc |
4734328 |
T |
|
| Q |
246 |
gatgcatttgaaaacatcaaagtctatcaaatctcacaat |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4734329 |
gatgcatttgaaaacatcaaagtctaccaaatctcacaat |
4734368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 285
Target Start/End: Complemental strand, 38316270 - 38316240
Alignment:
| Q |
255 |
gaaaacatcaaagtctatcaaatctcacaat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38316270 |
gaaaacatcaaagtctatcaaatctcacaat |
38316240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University