View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6583_low_10 (Length: 252)
Name: NF6583_low_10
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6583_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40181832 - 40182079
Alignment:
| Q |
1 |
atgatgatgattgacttagaaagttggagaaaatgaccttgttagggttaggaattcttcgtgtggatgatgatgaggaggaag------aagaagaagt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
40181832 |
atgatgatgattgacttagaaagttggagaaaatgaccttgttagggttaggaattcttcgtgtggatgatgataaggaggaagaagaagaagaagaagt |
40181931 |
T |
|
| Q |
95 |
gatgtagttcctgccatatcttgctgcaaacgacacccacatcttcttatatatagtttgcgagtgagaatcggttggagacaaacggcacacacacggc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40181932 |
gatgtagttcctgccatatcttgctgcaaacgacacccacatctgcatatatatagtttgcgagtgagaatcggttggagacagacggcacacacacggc |
40182031 |
T |
|
| Q |
195 |
taggtttaggtttactgagcgattgagaatgttgaactctaacctatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40182032 |
taggtttaggtttactgagcgattgagaatgttgaactctaacctatg |
40182079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University