View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6583_low_2 (Length: 553)
Name: NF6583_low_2
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6583_low_2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 4 - 553
Target Start/End: Original strand, 42849503 - 42850052
Alignment:
| Q |
4 |
atgtccaagaaaatgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattc |
103 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849503 |
atgtacaaaaaaatgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattc |
42849602 |
T |
|
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849603 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
42849702 |
T |
|
| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849703 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
42849802 |
T |
|
| Q |
304 |
gattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaattgaaactctc |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849803 |
gattccataagctttatcaaatcctccaaactcaataatccatcaccatcagaatccaatgcctcaattgcaatttccacttctttcaattgaaactctc |
42849902 |
T |
|
| Q |
404 |
cgccaatcttcgccattcgactccttaactcgttcggcgaaatctttccgtcacagtcttcatcaaagtaactaagtacacgctcatattccatgttact |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849903 |
cgccaatcttcgccattcgactccttaactcgttcggcgaaatctttccgtcacggtcttcatcaaagtaactaagtacacgctcatattccatgttact |
42850002 |
T |
|
| Q |
504 |
cctcatgttaattatatattgttggcaatcaaaggctacaattggaaatc |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42850003 |
cctcatgttaattatatattgttggcaatcaaaggctacaattggaaatc |
42850052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 87 - 526
Target Start/End: Original strand, 42846599 - 42847038
Alignment:
| Q |
87 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846599 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
42846698 |
T |
|
| Q |
187 |
tcccccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846699 |
tcccccagttttttcaacatcctcttcaaactttttggcgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
42846798 |
T |
|
| Q |
287 |
tttcttcctctccccctgattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttc |
386 |
Q |
| |
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|||| |||||||||||||||||||| | | | |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
42846799 |
tttcctcctctccccctgattccattaacgtaatcaaatctcccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatttcaacttc |
42846898 |
T |
|
| Q |
387 |
tttcaattgaaactctccgccaatcttcgccattcgactccttaactcgttcggcgaaatctttccgtcacagtcttcatcaaagtaactaagtacacgc |
486 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||| |||||| |
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| T |
42846899 |
tttcaattgaaactctccgccaatcttcgccattcgactccttaactcgtttggcgaaatttttccgtctccatcttcatcaaagtaactaagaacacgc |
42846998 |
T |
|
| Q |
487 |
tcatattccatgttactcctcatgttaattatatattgtt |
526 |
Q |
| |
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||| ||||||| | ||| ||||||||| |||||||||| |
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| T |
42846999 |
tcaaattccatttccctcttcatgttaacaatatattgtt |
42847038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 91 - 523
Target Start/End: Original strand, 42839795 - 42840227
Alignment:
| Q |
91 |
tccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatccc |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
42839795 |
tccatcatgattctgaactcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaatccc |
42839894 |
T |
|
| Q |
191 |
ccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttc |
290 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42839895 |
ccaactttttcaacatcctcttcaaactctttggtgttatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttc |
42839994 |
T |
|
| Q |
291 |
ttcctctccccctgattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttc |
390 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
42839995 |
ttcctctccccctgattccattagcgctatcaaatcctccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttc |
42840094 |
T |
|
| Q |
391 |
aattgaaactctccgccaatcttcgccattcgactccttaactcgttcggcgaaatctttccgtcacagtcttcatcaaagtaactaagtacacgctcat |
490 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
42840095 |
aattgaaactctccgctaatcttcgccattcgactccttaattcgttcggggaaatctttccgtcgccatcttcatcaaagtaactaagaacacgctcaa |
42840194 |
T |
|
| Q |
491 |
attccatgttactcctcatgttaattatatatt |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
42840195 |
attccatgttactcctcatgttaattatatatt |
42840227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 104 - 393
Target Start/End: Original strand, 33931390 - 33931679
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
33931390 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33931489 |
T |
|
| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |
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|
| T |
33931490 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccacct |
33931589 |
T |
|
| Q |
304 |
gattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaat |
393 |
Q |
| |
|
|||||| | || || |||||||||||||| | ||||| ||||| ||||||| ||| ||||| || ||||| ||||||||||| |
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|
| T |
33931590 |
tcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33931679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 104 - 393
Target Start/End: Original strand, 33938195 - 33938484
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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|
| T |
33938195 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33938294 |
T |
|
| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |
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| T |
33938295 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccacct |
33938394 |
T |
|
| Q |
304 |
gattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaat |
393 |
Q |
| |
|
|||||| | || || |||||||||||||| | ||||| ||||| ||||||| ||| ||||| || ||||| ||||||||||| |
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| T |
33938395 |
tcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33938484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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