View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6583_low_3 (Length: 508)
Name: NF6583_low_3
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6583_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 40708510 - 40708998
Alignment:
| Q |
9 |
ggagcagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat |
108 |
Q |
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| T |
40708510 |
ggagaagagatggtgggatttttagaagttatgaaggttttaggttctatctgagtttcttggtttggttttccaattttggttgatgttgagtttcaat |
40708609 |
T |
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| Q |
109 |
caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgatttannnnnnnnagaaaaa |
208 |
Q |
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| T |
40708610 |
caattttccatattgggagctaatatgtgatacagtttcaggtaagttttctagcaatttccttagttatagccaatttgattttttttttttagaaaaa |
40708709 |
T |
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| Q |
209 |
atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag |
308 |
Q |
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| T |
40708710 |
atagagatgaagagatttgataatccgcttagtggaataaggcttggtcgtccatattgaagagatttgatgaaaattgctgggaataaagagtttatag |
40708809 |
T |
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| Q |
309 |
gataaaagagaacatggaggataaagagtaagggagtgctgagttgtt------------gacaatagaaaaactcagtgagtatcaataatcaaatgtt |
396 |
Q |
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| T |
40708810 |
gataaaagagaacatggaggataaagagtaagggagtgctgagttgttaagcggaggaaggacaatagaaaaactcagtgagtatcaataatcaaatgtt |
40708909 |
T |
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| Q |
397 |
gctttggttgatgaacatgattattgatcataagcaagcatgtgttgcacaatcaatcaagtgtcctttactcaattggtttaaatgcttacc |
489 |
Q |
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| T |
40708910 |
gctttggttgatgaacatgattattgatcataagcaagcatgtgttgca----caatcaagtgtcctttactcaattggtttaaatgcttacc |
40708998 |
T |
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